The integrative taxonomic approach reveals host specific species in an encyrtid parasitoid species complex

Integrated taxonomy uses evidence from a number of different character types to delimit species and other natural groupings. While this approach has been advocated recently, and should be of particular utility in the case of diminutive insect parasitoids, there are relatively few examples of its application in these taxa. Here, we use an integrated framework to delimit independent lineages in Encyrtus sasakii (Hymenoptera: Chalcidoidea: Encyrtidae), a parasitoid morphospecies previously considered a host generalist. Sequence variation at the DNA barcode (cytochrome c oxidase I, COI) and nuclear 28S rDNA loci were compared to morphometric recordings and mating compatibility tests, among samples of this species complex collected from its four scale insect hosts, covering a broad geographic range of northern and central China. Our results reveal that Encyrtus sasakii comprises three lineages that, while sharing a similar morphology, are highly divergent at the molecular level. At the barcode locus, the median K2P molecular distance between individuals from three primary populations was found to be 11.3%, well outside the divergence usually observed between Chalcidoidea conspecifics (0.5%). Corroborative evidence that the genetic lineages represent independent species was found from mating tests, where compatibility was observed only within populations, and morphometric analysis, which found that despite apparent morphological homogeneity, populations clustered according to forewing shape. The independent lineages defined by the integrated analysis correspond to the three scale insect hosts, suggesting the presence of host specific cryptic species. The finding of hidden host specificity in this species complex demonstrates the critical role that DNA barcoding will increasingly play in revealing hidden biodiversity in taxa that present difficulties for traditional taxonomic approaches.     

Diversity of the rotifer Brachionus plicatilis species complex (Rotifera: Monogononta) in Iran through integrative taxonomy

Faunistic survey using a DNA taxonomy approach may provide different results from morphological methods, especially for small and understudied animals. In this study, we report the results from morphometric analyses (linear measurements of the lorica) and DNA taxonomy (generalized mixed Yule coalescent model on the barcoding mtDNA locus cytochrome c oxidase subunit I) performed on 15 clonal lineages of the rotifer Brachionus plicatilis species complex from six Iranian inland saltwaters. The DNA taxonomy approach found more units of diversity (four) than the morphometric approach (two) in the studied rotifers. Three of the taxa identified in this study are already known as described valid species or as‐yet unnamed lineages, but a new, additional lineage is also identified from Iran. © 2014 The Linnean Society of London     

Revision of the Trichosirocalus horridus (Panzer) species complex, with description of two new species infesting thistles (Coleoptera: Curculionidae, Ceutorhynchinae)

Abstract The Trichosirocalus horridus (Panzer) species complex is defined and revised and two new sibling species are described and figured: T. briesei (type locality: San Esteban de Gormaz, Soria, Spain) and T. mortadelo (type locality: Canberra, Australia, introduced). The existence of these siblings could explain the different food preferences observed between the different populations or strains of the supposed single species T. horridus .     

Integrative taxonomy reveals cryptic Amazonian species of Pristimantis (Anura: Strabomantidae)

Hypotheses on the taxonomic status of two Bolivian Pristimantis with taxonomic problems are assessed by an integrative taxonomic approach that integrates three independent lines of evidence: external morphology, prezygotic reproductive barriers (advertisement calls) and reciprocal monophyly (phylogenetic analyses of partial 16S mtDNA sequences). Central Andean Bolivian populations previously assigned to either P. peruvianus or P. dundeei, and lowland Amazonian populations from southern Peru and northern Bolivia previously considered P. peruvianus do not correspond to these species. Indeed, multivariate analyses of qualitative and quantitative morphological and bioacoustic characters, and phylogenetic analyses support the hypothesis that they represent different, previously unknown, cryptic lineages. They are herein described as new species. The former is a sibling species of P. fenestratus that inhabits the Amazonian and semideciduous forests of the Andean foothills in central Bolivia. The latter is sibling to the Andean species P. danae and is parapatric to it in the Amazonian lowland forests and adjacent foothills of northern Bolivia, southern Peru and adjacent Brazil. Most species of Neotropical frogs, and especially Pristimantis, have been described by using external qualitative morphological characters only. An extended integrative taxonomic approach, as exemplified herein, may lead to the discovery of many other cryptic and sibling lineages that would increase the species numbers of tropical areas. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 155 , 97–122.     

Phylogenomics and integrative taxonomy reveal two new species of Amana (Liliaceae)

Until now the genus Amana (Liliaceae), known as ‘East Asian tulips’, has contained just seven species. In this study, a phylogenomic and integrative taxonomic approach was used to reveal two new species, Amana nanyueensis from Central China and A. tianmuensis from East China. A. nanyueensis resembles Amana edulis in possessing a densely villous-woolly bulb tunic and two opposite bracts, but differs in its leaves and anthers. Amana tianmuensis resembles Amana erythronioides in possessing three verticillate bracts and yellow anthers, but differs in aspects of its leaves and bulbs. These four species are clearly separated from each other in principal components analysis based on morphology. Phylogenomic analyses based on plastid CDS further support the species delimitation of A. nanyueensis and A. tianmuensis and suggests they are closely related to A. edulis. Cytological analysis shows that A. nanyueensis and A. tianmuensis are both diploid (2n = 2x = 24), different from A. edulis, which is either diploid (northern populations) or tetraploid (southern populations, 2n = 4x = 48). The pollen morphology of A. nanyueensis is similar to other Amana species (single-groove germination aperture), but A. tianmuensis is quite different because of the presence of a sulcus membrane, which creates the illusion of double grooves. Ecological niche modelling also revealed a niche differentiation between A. edulis, A. nanyueensis and A. tianmuensis.     

New host plant records for the Euwallacea fornicatus (Eichhoff) species complex (Coleoptera: Curculionidae: Scolytinae) across its natural and introduced distribution

Species within the Euwallacea fornicatus (Eichhoff) species complex are one of the few ambrosia beetles that infest healthy plants and are a potential phytosanitary threat as it causes considerable damage to many tree species in its native and introduced distribution. We updated the list to 412 plant species in 75 families that are known hosts for the E. fornicatus species complex, including 27 new host records, 20 of which are reproductive hosts, in the families Annonaceae, Apocynaceae, Araliaceae, Caricaceae, Euphorbiaceae, Fabaceae, Lauraceae, Magnoliaceae, Malvaceae, Meliaceae, Moraceae, Myristicaceae, Rubiaceae, Salicaceae, Sapindaceae, and Sapotaceae.     

Integration of conflict into integrative taxonomy: fitting hybridization in species delimitation of Mesocarabus (Coleoptera: Carabidae)

In species differentiation, characters may not diverge synchronously, and there are also processes that shuffle character states in lineages descendant from a common ancestor. Species are thus expected to show some degree of incongruence among characters; therefore, taxonomic delimitation can benefit from integrative approaches and objective strategies that account for character conflict. We illustrate the potential of exploiting conflict for species delimitation in a study case of ground beetles of the subgenus Carabus (Mesocarabus), where traditional taxonomy does not accurately delimit species. The molecular phylogenies of four mitochondrial and three nuclear genes, cladistic analysis of the aedeagus, ecological niche divergence and morphometry of pronotal shape in more than 500 specimens of Mesocarabus show that these characters are not fully congruent. For these data, a three‐step operational strategy is proposed for species delimitation by (i) delineating candidate species based on the integration of incongruence among conclusive lines of evidence, (ii) corroborating candidate species with inconclusive lines of evidence and (iii) refining a final species proposal based on an integrated characterization of candidate species based on the evolutionary analysis of incongruence. This procedure provided a general understanding of the reticulate process of hybridization and introgression acting on Mesocarabus and generated the hypothesis of seven Mesocarabus species, including two putative hybrid lineages. Our work emphasizes the importance of incorporating critical analyses of character and phylogenetic conflict to infer both the evolutionary history and species boundaries through an integrative taxonomic approach.     

萧氏松茎象的早期寄主研究

本文以调查的事实材料为基础，对萧氏松茎象的早期寄主进行了研究，说明该虫最先在马尾松树种上发生，而后逐渐蔓延到从国外引进的湿地松、火炬松和国外松上猖獗危害。 萧氏松茎象（ＨｙｌｏｂｉｔｅｌｕｓｘｉａｏｉＺｈａｎｇ）是江西省吉安地区 １９８８年发现的国外松新害虫。十多年来，该虫蔓延十分迅速，危害国外松特别严重。据１９９９年调查，江西省４０余县（市）有分布．发生面积１万公顷以上，成为国外松的主要害虫。究竟此虫最初寄主是何树种，它为什么发展那么快呢？弄清这一问题十分重要，不仅对制订正确的防范措施，而且对研…     

Integrative taxonomy reveals the exceptional species diversity of Eudonia (Lepidoptera: Crambidae) in Tibet,China

The genus Eudonia is rarely recorded in Tibet despite having a wide occurrence in the plateau. In the taxonomy of the genus, the morphological characters are insufficient to delimit the closely related congeners due to the subtly interspecific differences and conspicuously intraspecific variability. In this study, the Tibetan species are studied with an integrative approach using molecular data and morphological characters. It is found that the number of Eudonia species in Tibet accounts for about 20% of the total species previously catalogued for the genus in China. Five species are described as new to science: Eudonia galonglaensis Li, sp. nov., E. varians Li, sp. nov., E. triangulata Li, sp. nov., E. angusta Li, sp. nov., and E. bomiensis Li, sp. nov. The potential distribution of Chinese Eudonia is predicted and illustrated using MaxEnt and DIVA-GIS. The results reveal the exceptionally high species diversity of Eudonia in Tibet for the first time, demonstrate that the integrative morphological and molecular approach is highly effective for resolving the difficult-to-distinguish morphologies, and predict the region of China to the south of 35°N and to the east of 95°E as having potentially high Eudonia species diversity.

http://www.zoobank.org/urn:lsid:zoobank.org:pub:EA3C5D21-9674-46E4-838D-48D5A098314B     

Host‐associated genetic divergence and taxonomy in the Rhinusa pilosa Gyllenhal species complex: an integrative approach

A combined taxonomic, morphological, molecular and biological study revealed that stem‐galling weevils from the genus Rhinusa associated with toadflaxes from the genus Linaria (Plantaginaceae) are composed of three different species: Rhinusa pilosa, Rhinusa brondelii and Rhinusa rara sp.n. The authentic field host plants are respectively, Linaria vulgaris, Linaria purpurea and Linaria genistifolia/ Linaria dalmatica. These weevil species can be distinguished from each other by a few subtle morphological characteristics, mainly in the shape of the rostrum and of the integument. An analysis of the mitochondrial [cytochrome oxidase subunit II gene (COII) and 16S ribosomal RNA gene (16S)] and nuclear (elongation factor‐1α, EF‐1α) sequence data revealed high genetic divergence among these species. Uncorrected pairwise distances on mtCOII gene were 14.3% between R. pilosa and R. brondelii, 15.7% between R. pilosa and R. rara, while R. brondelii and R. rara were approximately 11% divergent from each other. Divergences obtained on 16S and nuclear EF‐1α genes were congruent. However, substantial intraspecific mitochondrial divergence was recorded for all studied populations of R. pilosa s.s. showing two mtDNA lineages, with estimated COII and 16S divergences of 4% and 1.6%, respectively. Nuclear pseudogenes (Numts) and Wolbachia influence, although recorded within both lineages, were excluded as possible causatives of the mtDNA divergence, while EF‐1α indicated absence of lineage sorting. Species from the R. pilosa complex are estimated to have diverged from each other approximately 7.2 million years ago (mya; late Miocene), while R. brondelii and R. rara diverged from each other about 4.7 mya (early Pliocene). This published work has been registered in ZooBank, http://zoobank.org/urn:lsid:zoobank.org:pub:EEDD6248‐01DB‐4B4A‐B79D‐C5606393E3AA .     

Integrative taxonomy of Flatbill Flycatchers (Tyrannidae) reveals a new species from the Amazonian lowlands

Integrative taxonomic studies continue to reveal that many current polytypic species of birds are in fact constituted by two or more species and therefore have been central in uncovering ‘hidden’ or ‘cryptic’ biodiversity. The Olivaceous Flatbill (Aves: Tyrannidae: Rhynchocyclus olivaceus) currently has nine recognized subspecies distributed throughout the Neotropics, but so far, no complete phylogenetic hypothesis exists to test the validity and evolutionary relationships among them. To remedy this, we conducted a multi-character integrative taxonomic revision of the genus Rhynchocyclus, focusing on the polytypic R. olivaceus. The combination of a taxonomically dense sampled multilocus phylogeny (including three mitochondrial and two nuclear genes) with phenotypic analyses including morphological and vocal characters pointed to several taxonomic inconsistencies within R. olivaceus. The analyses strongly support that R. olivaceus is paraphyletic, with an exclusively cis-Andean clade (where the topotypic R. olivaceus is found) clustering as sister to Rhynchocyclus fulvipectus, to the exclusion of a clade grouping trans-Andean and western Amazonian populations currently placed in R. olivaceus—one of which is unnamed and fully diagnosable based on vocal and genetic characters. Consistent with the phylogenetic results, our vocal analyses identified at least four morphologically cryptic lineages within R. olivaceus that can be mutually diagnosed from each other by different loudsongs and call parameters. Therefore, we provide evidence for splitting these four groups into separate species, two of which are sympatric but not syntopic in western Amazonia, including an unnamed species described herein—Rhynchocyclus cryptus, sp. nov. urn:lsid:zoobank.org:act:2DC17190-2BDD-49EC-88E6-4CF2FC2562A3.     

Integrative taxonomy reveals a new species of Callisto (Lepidoptera,Gracillariidae) in the Alps

Europe has one of the best-known Lepidopteran faunas in the world, yet many species are still being discovered, especially in groups of small moths. Here we describe a new gracillariid species from the south-eastern Alps, Callisto basistrigella Huemer, Deutsch & Triberti, sp. n. It shows differences from its sister species Callisto coffeella in morphology, the barcode region of the cytochrome c oxidase I gene and the nuclear gene histone H3. Both Callisto basistrigella and Callisto coffeella can co-occur in sympatry without evidence of admixture. Two Callisto basistrigella specimens show evidence of introgression. We highlight the importance of an integrative approach to delimit species, combining morphological and ecological data with mitochondrial and nuclear sequence data. Furthermore, in connection with this study, Ornix blandella Müller-Rutz, 1920, syn. n. is synonymized with Callisto coffeella (Zetterstedt, 1839).     

Biology and ecology of theDusmoecetes Jeannel (Col. Curculionidae) species complex on Marion Island

Summary TheDusmoecetes species complex on sub-Antarctic Marion Island comprises two species. The larger species,D. similis (C.O. Waterhouse), feeds on angiosperms as adults and detritus as larvae, whereas the smaller species,D. marioni Jeannel feeds on bryophytes in all stages.D. similis has seven larval instars and a generation time of one year or longer.D. marioni has between five and seven larval instars, depending on the plant community it inhabits, and a generation time of one year or less. Immatures ofD. similis have a theoretical null point of development of -0.62°C and aQ ₁₀ of 3.57. In both species there are overlapping generations in the field, although in the case ofD. similis there is a distinct seasonal emergence of adults starting in September. Mean standing crop of larvae on the coastal plain is approximately 5.5 kg (dry mass)·ha^-1, but can be as high as 11.85 kg (dry mass)·ha^-1 inAzorella selago dominated communities. This study indicates that both species are important herbivores and/or detritivores on Marion Island.     

Revision of the Cales noacki species complex (Hymenoptera,Chalcidoidea, Aphelinidae)

The genus Cales (Hymenoptera: Aphelinidae) includes 13 species worldwide, of which 10 form a highly morphologically uniform species complex with a native range in the Neotropical region. We recognize ten species previously attributed to a single Neotropical species, Cales noacki Howard, which in the strict sense is a species broadly disseminated to control woolly whitefly. A neotype is designated for C. noacki, and it is redescribed based on specimens molecularly determined to be conspecific with the neotype. Newly described species include: C. bicolor Mottern, n.sp ., C. breviclava Mottern, n.sp ., C. brevisensillum Mottern n.sp ., C. curvigladius Mottern, n.sp ., C. longiseta Mottern, n.sp ., C. multisensillum Mottern n.sp ., C. noyesi Mottern, n.sp ., C. parvigladius Mottern, n.sp . and C. rosei Mottern, n.sp . Species are delimited based on a combination of morphological and molecular data (28S‐D2 rDNA and COI). Additional specimens are included in the phylogenetic analyses and although these likely represent several new species, we lack sufficient specimen sampling to describe them at this time. Cales are highly morphologically conserved and character‐poor, resulting in several cryptic species. A molecular phylogeny of the known Neotropical species based on 28S‐D2–5 rDNA and a 390‐bp segment of COI is included, and identification keys to males and females are provided. This published work has been registered in ZooBank, http://zoobank.org/urn:lsid:zoobank.org:pub:7FEB0479‐9B2E‐48E8‐8603‐4B7C2759D4EC .     

Comparative nutritional ecology of bryophyte and angiosperm feeders in a sub-Antarctic weevil species complex (Coleoptera: Curculionidae)

Abstract.

• 1 Highly productive and st,ructurally diverse angiosperm communities occur on sub-Antarctic Marion Island, yet cryptogams are the main source of energy and nutrients for five of the six native weevil species (Curculionidae: Ectemnorhinini) that occur there.
• 2 Previously it has been hypothesized that low-temperature regimes, during the Pleistocene, precluded angiosperm herbivory. This hypothesis was based, inter alia, on the assumption that at low temperatures feeding on bryophytes is more nutritionally advantageous than feeding on vascular plants.
• 3 This assumption was tested by comparing the consumption rate (CR) and approximate digestibility (AD) (mass and energy) of bryophytes and angiosperms in two Dusmoecetes species indigenous to Marion Island.
• 4 The approximate digestibility of Blepharidophyllum densifolium (Scapaniaceae) energy and dry mass were similar for D.marioni Jeannel adults at 5°C and at 10°C. D.similis (C. O. Waterhouse) adults fed Azorella selago Hook (Apiaceae) leaves also had similar AD for food dry mass and energy at 5°C and at 10°C. However, the performance of D.similis on A.selago leaves and flowers at 5°C was better than that of D.marioni on bryophytes at both temperatures.
• 5 Bryophyte feeding does not appear to be nutritionally more advantageous at low temperatures in the sub-Antarctic, nor does angiosperm herbivory appear to be comparatively disadvantageous at low temperatures, although D.similis does not feed on Acaena magellanica (Lam.) (Rosaceae) at 5°C. It seems likely that moss-feeding evolved in response to an absence of angiosperms during glacial periods, rather than because of a nutritional advantage associated with bryophagy at low temperatures.

     

Tracing the origin of a cryptic invader: phylogeography of the Euwallacea fornicatus (Coleoptera: Curculionidae: Scolytinae) species complex

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