Complex patterns in fossilized stromatolites revealed by hyperspectral imaging (400–2496 nm)

Hyperspectral imaging (400–2496 nm) was used to quantitatively map surface textures and compositional variations in stromatolites to determine whether complexity of textures could be used as evidence to support biogenicity in the absence of preserved biomarkers. Four samples of 2.72–2.4 Ga stromatolites from a variety of settings, encompassing marine and lacustrine environments, were selected for hyperspectral imaging. Images of the sawn surfaces of samples were processed to identify reflectance and mineral absorption features and quantify their intensity (as an index of mineral abundance) using automated feature extraction. Amounts of ferrous iron were quantified using a ratio of reflectance at 1650 and 1299 nm. Visible near infrared imagery (400–970 nm) did not reveal additional textural patterns to those obtained from visual inspection. Shortwave infrared imagery (1000–2496 nm), however, revealed complex laminar and convoluted patterns, including a distinctive texture of sharp peaks and broad, low troughs in one sample, similar to living tufted microbial mats. Spectral analysis revealed another sample to be composed of dolomite. Two other samples were dominated by calcite or chlorite ± illite. Large variations in amounts of ferrous iron were found, but ferric iron was exclusively located in the oxidation crust. Hyperspectral imaging revealed large differences between parts of a sample of biogenic and non‐biogenic origin. The former was characterized by calcite with varying amounts of ferrous iron, distributed in lenticular, convoluted patterns; the latter by Mg‐Fe chlorite with large amounts of aluminium silicate, distributed as fine laminar layers. All minerals identified by hyperspectral imaging were confirmed by thin section petrography and XRD analyses. Spatial statistics generated from quantitative minerals maps showed different patterns between these different parts of the sample. Thus, hyperspectral imaging was shown to be a powerful tool for detecting structures in stromatolites that could be used, together with other lines of evidence, to support biogenicity.     

Skeletal muscle dispersion (400‐1000 nm) and kinetics at optical clearing

Skeletal muscle dispersion and optical clearing (OC) kinetics were studied experimentally to prove the existence of the refractive index (RI) matching mechanism of OC. Sample thickness and collimated transmittance spectra were measured during treatments with glucose (40%) and ethylene glycol (EG; 99%) solutions and used to obtain the time dependence of the RI of tissue fluids based on the proposed theoretical model. Calculated results demonstrated an increase of RI of tissue fluids and consequently proved the occurrence of the RI matching mechanism. The RI increase was observed for the wavelength range between 400 and 1000 nm and for the 2 probing molecules explored. We found that for 30 min treatment with 40% glucose and 99% EG, RI of sarcoplasm plus interstitial fluid was increased at 800 nm from 1.328 to 1.348 and from 1.328 to 1.369, respectively.      

Design,synthesis, and conformational studies of the hGM‐CSF derived peptide (13–27)–Gly–(75–87)

An analogue of the human granulocyte–macrophage colony‐stimulating factor (hGM‐CSF), hGM‐CSF(13–27)–Gly–(75–87) was synthesized by solid phase methodology. This analogue was designed to comprise helices A and C of the native growth factor, linked by a glycine bridge. Helices A and C form half of a four‐helix bundle motif in the crystal structure of the native factor and are involved in the interaction with α‐ and β‐chains of the heterodimeric receptor. A conformational analysis of the synthetic analogue by CD, two‐dimensional nmr spectroscopy, and molecular dynamics calculations is reported. The analogue is in a random structure in water and assumes a partially α‐helical conformation in a 1 : 1 trifluoroethanol/water mixture. The helix content in this medium is ∼ 70%. By 2D‐nmr spectroscopy, two helical segments were identified in the sequences corresponding to helices A and C. In addition to medium‐ and short‐range NOESY connectivities, a long‐range cross peak was found between the Cβ proton of Val¹⁶ and NH proton of His⁸⁷ (using the numbering of the native protein). Experimentally derived interproton distances were used as restraints in molecular dynamics calculations, utilizing the x‐ray coordinates as the initial structure. The final structure is characterized by two helical segments in close spatial proximity, connected by a loop region. This structure is similar to that of the corresponding domain in the x‐ray structure of the native growth factor in which helices A and C are oriented in an antiparallel fashion. The N‐terminal residues Gly–Pro of helix C are involved in an irregular turn connecting the two helical segments. As a consequence, helix C is appreciably shifted and slightly rotated with respect to helix A compared to the x‐ray structure of the native growth factor. These small differences in the topology of the two helices could explain the lower biological activity of this analogue with respect to that of the native growth factor. © 1999 John Wiley & Sons, Inc. Biopoly 50: 545–554, 1999     

Investigation on the co‐luminescence effect of europium (III)–lanthanum(III)–dopamine–sodium dodecylbenzene sulfonate system and its application

A novel luminescence, enhancement phenomenon in the europium(III)–dopamine–sodium dodecylbenzene sulfonate system was observed when lanthanum(III) was added. Based on this, a sensitive co‐luminescence method was established for the determination of dopamine. The luminescence signal for the europium (III)–lanthanum(III)–dopamine–sodium dodecylbenzene sulfonate system was monitored at λ_ex = 300 nm, λ_em =618 nm and pH 8.3. Under optimized conditions, the enhanced luminescence signal responded linearly to the concentration of dopamine in the range 1.0 × 10^–10–5.0 × 10^–7 mol/L with a correlation coefficient of 0.9993 (n = 11). The detection limit (3σ) was 2.7 × 10^–11 mol/L and the relative standard deviation for 11 parallel measurements of 3.0 × 10^–8 mol/L dopamine was 1.9%. The presented method was successfully applied for the estimation of dopamine in samples of pharmaceutical preparations, human serum and urine. The possible luminescence enhancement mechanism of the system is discussed briefly. Copyright © 2013 John Wiley & Sons, Ltd.     

CD measurements of β‐amyloid (1–40) and (1–42) in the condensed phase

Circular dichroism (CD) spectroscopy of proteins/peptides in thin films can provide valuable information on the structures in the aggregated states; however, it is difficult to estimate the secondary structure content quantitatively due to artifact signals arising from macroscopic anisotropies which is unique to the solid phase. Using a Universal Chiroptical Spectrophotometer (UCS‐1) together with the measurement and analytical procedures we have developed, we could obtain artifact‐free CD spectra of cast and Langmuir‐Blodgett (L‐B) films of synthetic peptides, Aβ (1–40) and (1–42) which are related to Alzheimer's disease. The work gave insights into the mechanisms for structural transformation and amyloid‐like aggregation. © 2010 Wiley Periodicals, Inc. Biopolymers 95: 127–134, 2011.     

Micrometeorological conditions and canopy energy exchanges of a neotropical rain forest (Surumoni-Crane Project,Venezuela)

Vertical profiles of air temperature, humidity, wind speed and photosynthetically active radiation were examined systematically within and above a primary Amazonian rain forest in Southern Venezuela. During daylight hours the observed gradients of temperature and humidity suggest that turbulent mixing between vegetation and the atmosphere is reasonably efficient in the top two-thirds of the forest, whereas the understorey remains partially isolated. At night, however, the canopy exhibits a significant decoupling from the overlying atmospheric layer due to substantial radiative cooling, causing a stable density stratification above. It is fairly clear that these variations in microclimate produce a spectrum of different living conditions for the flora and fauna.In addition, the collected data provide important information concerning the turbulent exchanges of heat and water vapour. Actual evapotranspiration loss from the forest was estimated using a single-layer version of the Penman-Monteith equation including a submodel of canopy conductance. The values computed for hourly and daily periods were found to agree well with the simultaneously recorded xylem sap flow of several tree species. Thus they prove that this application is suitable to describe the environmental impact of micrometeorological and physiological factors on the complex process of evapotranspiration.     

Antiproliferative effect of the C-terminal fragments of parathyroid hormone-related protein,PTHrP-(107–111) and (107–139), on osteoblastic osteosarcoma cells

The C-terminal region of parathyroid hormone-related protein (PTHrP) containing the sequence (107–111) appears to be a potent inhibitor of osteoclastic bone resorption. In the present study, we have investigated the effect of human (h)PTHrP (107–139) and hPTHrP (107–111)NH₂ on the proliferation of osteoblastic rat osteosarcoma UMR 106 cells. We found that both C-terminal PTHrP peptides, like hPTHrP (1–141), were antimitogenic for these cells, between 1 pM and 10 nM. [Tyr³⁴]hPTHrP (1–34)NH₂ was as potent as these peptides but less effective as growth inhibitor in these cells. UMR 106 cells were found to produce and secrete immunoreactive PTHrP. Addition of anti-PTHrP neutralizing antibodies to C- and N-terminal epitopes of PTHrP increased the growth of these cells. Our data suggest that the antiproliferative effect of these C-terminal PTHrP analogs may be independent of cyclic adenosine 3′:5′-monophosphate (cAMP) and mediated by protein kinase C. These findings support an autocrine role of PTHrP in bone metabolism. J. Cell. Physiol. 170:209–215, 1997. © 1997 Wiley-Liss, Inc.     

Soil and canopy Pseudoscorpiones (Arthropoda,Arachnida) in a monodominant forest of Attalea phalerata Mart. (Arecaceae) in the Brazilian Pantanal

We studied the occurrence of Pseudoscorpiones in the soil, leaf litter, and in canopies of a monodominant forest of Attalea phalerata at different seasons in the northern region of the Brazilian Pantanal. A total of 1197 pseudoscorpions from nine families and 16 species were sampled. Olpiidae, Chernetidae, and Geogarypidae predominated in soil and leaf litter. Chernetidae was the most abundant family in canopies. Soil and canopy corresponded to distinct habitats in relation to pseudoscorpion abundance and richness, with the canopies being the most diversified environment. These habitats are occupied in different ways by pseudoscorpion populations. Geogarypus sp. occurs in the edaphic environment during receding water and dry season, but can be found in canopies of A. phalerata exclusively during high water. This alternation in the use of the edaphic environments and canopies in the same area by pseudoscorpion species probably happens due to the strong seasonality of the Brazilian Pantanal.     

Mangrove forest distributions and dynamics (1975–2005) of the tsunami‐affected region of Asia†

Aim We aimed to estimate the present extent of tsunami‐affected mangrove forests and determine the rates and causes of deforestation from 1975 to 2005. Location Our study region covers the tsunami‐affected coastal areas of Indonesia, Malaysia, Thailand, Burma (Myanmar), Bangladesh, India and Sri Lanka in Asia. Methods We interpreted time‐series Landsat data using a hybrid supervised and unsupervised classification approach. Landsat data were geometrically corrected to an accuracy of plus‐or‐minus half a pixel, an accuracy necessary for change analysis. Each image was normalized for solar irradiance by converting digital number values to the top‐of‐the atmosphere reflectance. Ground truth data and existing maps and data bases were used to select training samples and also for iterative labelling. We used a post‐classification change detection approach. Results were validated with the help of local experts and/or high‐resolution commercial satellite data. Results The region lost 12% of its mangrove forests from 1975 to 2005, to a present extent of c. 1,670,000 ha. Rates and causes of deforestation varied both spatially and temporally. Annual deforestation was highest in Burma (c. 1%) and lowest in Sri Lanka (0.1%). In contrast, mangrove forests in India and Bangladesh remained unchanged or gained a small percentage. Net deforestation peaked at 137,000 ha during 1990–2000, increasing from 97,000 ha during 1975–90, and declining to 14,000 ha during 2000–05. The major causes of deforestation were agricultural expansion (81%), aquaculture (12%) and urban development (2%). Main conclusions We assessed and monitored mangrove forests in the tsunami‐affected region of Asia using the historical archive of Landsat data. We also measured the rates of change and determined possible causes. The results of our study can be used to better understand the role of mangrove forests in saving lives and property from natural disasters such as the Indian Ocean tsunami, and to identify possible areas for conservation, restoration and rehabilitation.     

Identification of a high-molecular-weight (> 400 000) protein in hyaline cartilage

A high-molecular-weight (> 400 000) non-collagenous protein has been identified in normal articular cartilage from several mammalian species and in bovine tracheal cartilage. This protein is reduced by 2-mercaptoethanol to subunits with a molecular weight of 116 000, which appear to constitute approx. 2–4% of the total protein detectable by the Lowry assay in 4 M guanidinium chloride extracts of normal bovine and canine articular cartilage. Antiserum to the 116 kDa subunit protein from bovine articular cartilage cross-reacts with the intact and subunit proteins from bovine trachea and from normal canine, porcine and human articular cartilage. This protein is not found in non-cartilagenous tissues, suggesting that it is a cartilage-specific protein. We conclude that the > 400 kDa protein and its subunit are ubiquitous and quantitatively significant proteins in hyaline cartilage.     

Changes in the stand structure (1975–2000) of coastal Banksia forest in the long absence of fire

Abstract Revisitation studies enable long‐term changes in vegetation to be deciphered and insights into plant community succession to be gained. This is particularly important when assessing the effects of fire exclusion in ecosystems where fire is thought to have once been common. Using two adjacent coastal Banksia integrifolia forest stands in southern Victoria, Australia initially surveyed in 1975 by Hazard and Parsons, we document the changes that occurred in the stand structure between 1975 and 2000. Western Park (WP) has now remained unburnt for over 100 years while Cerberus Naval Base (CNB) was most recently burnt in 1942. Banksia integrifolia densities have decreased at both sites over the 25‐years period by an average of 42–77%, as have other coastal native shrubs (e.g. Leptospermum laevigatum, Leucopogon parviflorus). Trees at WP appear to have died due to old age while mortality at CNB is presumed to be due to stand thinning in response to intense competition for light. Successful recruitment by Banksia has been minimal; trees less than 9 cm girth over bark at breast height (GBBH) were absent at CNB while no trees <19 cm GBBH were observed at WP. The long‐term absence of disturbance such as fire is suspected to be one of the causes of regeneration failure of the stand at WP. Gap phase regeneration is not apparent in B. integrifolia and hence, long‐term succession to a more grassy community is likely when fire is excluded for long periods.     

2‐D mapping of skin chromophores in the spectral range 500 – 700 nm

The multi‐spectral imaging technique has been used for distant mapping of in‐vivo skin chromophores by analyzing spectral data at each reflected image pixel and constructing 2‐D maps of the relative concentrations of oxy‐/deoxy‐haemoglobin and melanin. Instead of using a broad visible‐NIR spectral range, this study focuses on narrowed spectral band 500–700 nm, speeding‐up the signal processing procedure. Regression analysis confirmed that superposition of three Gaussians is optimal analytic approximation for the oxy‐haemoglobin absorption tabular spectrum in this spectral band, while superposition of two Gaussians fits well for deoxy‐haemoglobin absorption and exponential function – for melanin absorption. The proposed approach was clinically tested for three types of in‐vivo skin provocations: ultraviolet irradiance, chemical reaction with vinegar essence and finger arterial occlusion. Spectral range 500–700 nm provided better sensitivity to oxy‐haemoglobin changes and higher response stability to melanin than two reduced ranges 500–600 nm and 530–620 nm. (© 2010 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

The effect of canopy cover and seasonal change on host plant quality for the endangered Karner blue butterfly (Lycaeidesmelissasamuelis)

Larvae of the Karner blue butterfly, Lycaeidesmelissasamuelis, feed solely on wild lupine, Lupinusperennis, from the emergence to summer senescence of the plant. Wild lupine is most abundant in open areas but Karner blue females oviposit more frequently on lupines growing in moderate shade. Can differences in lupine quality between open and shaded areas help explain this disparity in resource use? Furthermore, many lupines are senescent before the second larval brood completes development. How does lupine senescence affect larval growth? We addressed these questions by measuring growth rates of larvae fed lupines of different phenological stages and lupines growing under different shade conditions. The habitat conditions under which lupines grew and plant phenological stage did not generally affect final larval or pupal weight but did significantly affect duration of the larval period. Duration was shortest for larvae fed leaves from flowering lupines and was negatively correlated with leaf nitrogen concentration. Ovipositing in areas of moderate shade should increase?second-brood larval exposure to flowering lupines. In addition, larval growth was significantly faster on shade-grown lupines that were in seed than on similar sun-grown lupines. These are possible advantages of the higher-than-expected oviposition rate on shade-grown lupines. Given the canopy-related trade-off between lupine?abundance and quality, maintenance of canopy heterogeneity is an important conservation management goal. Larvae were also fed leaves growing in poor soil conditions and leaves with mildew infection. These and other feeding treatments that we anticipated would inhibit larval growth often did not. In particular, ant-tended larvae exhibited the highest weight gain per amount of lupine eaten and a relatively fast growth rate. This represents an advantage of ant tending to Karner blue larvae.     

†Kinzelbachilla ellenbergeri – a new ancestral species,genus and family of Strepsiptera (Insecta)

A single male specimen of a new species (†Kinzelbachilla ellenbergeri gen. et sp.n. ) of a new family of the endoparasitic Strepsiptera (†Kinzelbachillidae fam.n.) from Burmese amber is described and evaluated with respect to its systematic placement. Its features come very close to the presumptive groundplan of the order suggested in recent studies. Preserved plesiomorphic features are the following: fully sclerotized head with long coronal suture, small ommatidia not separated by chitinous bridges, absence of microtrichia between ommatidia, eight antennomeres, robust mandibles with dicondylic articulation, galea distinctly developed, free pro‐ and mesotrochanters, slender five‐segmented tarsi without adhesive soles, and equally sclerotized abdominal tergites and sternites. An important character that is not recognizable due to damage is the shape of the metapostnotum. This structure is transverse in the groundplan of Strepsiptera and in †Protoxenos, but elongated and shield‐like in all other known strepsipterans. In a cladistic analyses of 82 characters of adult males and additional characters for females and immatures (scored as unknown for all included fossils) †Kinzelbachilla is placed as sister group of all remaining strepsipterans except for †Protoxenos, followed by †Cretostylops and †Mengea as the third and fourth branches in the stem group, respectively. The position of †Protoxenos as first branch is suggested by three unambiguous apomorphic features of all remaining Strepsiptera, the reduced size of less than 6 mm, mandibles distinctly narrowing distad the basalmost part, and fan‐shaped hindwings which are broader than they are long. The hitherto known fossil stem group strepsipterans do not distinctly narrow the large morphological gap separating this order from its sister group, the Coleoptera. This published work has been registered in ZooBank, http://zoobank.org/urn:lsid:zoobank.org:pub:07554C01-DEC3-4080-A337-B1F46BC9070F .     

Age validation and growth of Micropogonias furnieri (Pisces – Sciaenidae) in a temporally open coastal lagoon (South‐western Atlantic – Rocha – Uruguay) based on otolith analysis

In this work 228 individuals of the whitemouth croaker Micropogonias furnieri collected in the Rocha coastal lagoon (Uruguay) from October 1997 to September 1998 were analysed. The species formed annuli in the otolith (sagitta) associated with the opaque zone (narrow opaque annulus), mainly in early winter when water temperature decreased, and reached the lowest values in July–August. The period of greatest growth occurred from December to June, partially overlapping with the spawning period (December–March) and in coincidence with the increase in marginal increment. Growth parameters determined for all individuals were K = 0.19, L _∞ = 30.2 and t₀ = ?2.12. Annual growth increments showed that individuals grew rapidly and attained over 50% of their maximum observed size in the second year of life. In the third year, individuals attained sizes of first maturity at 11–12 cm less than estimates for the Río de la Plata spawning area and coastal areas of Brazil. The increment in length‐at‐age in the Rocha coastal lagoon was smaller than in individuals inhabiting the continental shelf (up to 50 m depth).     

Micellar effect on the photophysics of heteroleptic ruthenium(II)–phenanthrolinedisulfonato complexes

Luminescent heteroleptic ruthenium(II) complexes of type RuL_nX_3–n [L = 1,10‐phenanthroline (phen), X = 4,7 diphenyl phenanthroline disulfonate, (dpsphen) n = 0,1,2,3] were synthesized and their photophysical properties investigated in homogeneous and cationic (CTAB), anionic (SDS) and nonionic (Triton X‐100) micelles. The luminescent quantum yield and lifetime of the complexes were found to increase in the presence of micellar media and on the introduction of a disulfonate ligand into the coordination sphere. Both electrostatic and hydrophobic interactions play an important role in the micellar media. Thus, by changing the nature of the ligands and the medium, we were able to tune the photophysical properties of Ru(II) complexes. Copyright © 2015 John Wiley & Sons, Ltd.