The environmental and cultural contexts of the late Iron Age and medieval settlement in the Mazurian Lake District,NE Poland: combined palaeobotanical and archaeological data

Pollen analysis of sediments from three lakes and analysis of plant macroremains including charcoal from archaeological sites in the Mazurian Lake District provide new data for the reconstruction of vegetation changes related to human activity between the 1st and 13th century ad. At that time settlements of the Bogaczewo culture (from the turn of the 1st century ad to the first part of the 5th century ad), the Olsztyn Group (second part of the 5th century ad to the 7th or beginning of the 8th century ad), and the Prussian Galinditae tribes (8th/9th–13th century ad) developed. The most intensive woodland clearing occurred between the 1st and 6th/7th century ad. Presence of Cerealia-type, Secale cereale and Cannabis-type pollen, as well as macroremains of Hordeum vulgare, S. cereale, Triticum spelta, T. cf. monococcum, T. cf. dicoccum, Avena sp. and Panicum miliaceum documented local agriculture. High Betula representation synchronous with microcharcoal occurrence suggests shifting agriculture. After forest regeneration between c. ad 650 and 1100, the area was strongly deforested due to the early medieval occupation by Prussian tribes. The archaeobotanical examination of samples taken in a cemetery and a large settlement of the Roman Iron Age revealed strong differences in the taxonomic composition of the fossil plant remains. An absolute dominance of birch charcoal in the samples from the cemetery indicates its selective use for funeral pyre construction. There is a difference between cereals found in both contexts: numerous grains of Triticum have been found in the cemetery, while in the settlement crops were represented mostly by Secale and Hordeum. Grass tubers, belonging probably to Phleum pratense, are among the particularly interesting plant remains found in the cemetery.     

A short history of Lagenaria siceraria (bottle gourd) in the Roman provinces: morphotypes and archaeogenetics

Lagenaria siceraria (Molina) Standl. (bottle gourd) is pantropic and displays large variation in fruit and seed shape. Two subspecies are currently recognized: the African L. siceraria ssp. siceraria and the Asian L. siceraria ssp. asiatica. The Asian type of bottle gourd belongs to the earliest domesticated plants in the Americas. In Europe, bottle gourd only appears with some frequency from the Roman period onwards. The paper is the study of ancient DNA (aDNA) and seed morphology of one almost complete bottle gourd fruit from the Roman site of Oedenburg/Biesheim–Kunheim, France (1st century a.d.), and from individual seed finds from the Roman vicus of Petinesca–Vorderberg, Switzerland (3rd century a.d.), both recovered from waterlogged layers. Width and length measurements of seeds show large variation. Based on the index of width to length, seeds from both sites differ significantly (p?<?0.0001 Mann–Whitney) suggesting that there were different variants present north of the Alps. Genetically, the bottle gourd fruit from Roman Oedenburg/Biesheim–Kunheim and one commercial cultivar L. siceraria cv. ‘Herkuleskeule’ are of Asian origin as identified by three Asian and African specific chloroplast markers. These results support an early and long-lasting presence of the Asian type of domestic bottle gourd in Europe. No chloroplast markers were found in the seeds from Petinesca–Vorderberg. However preserved nuclear high copy 5.8S rDNA fragments correctly matched to Cucurbitaceae, further supporting the evidence for preservation of DNA in waterlogged plant remains.     

Mechanisms used by the inhabitants of a sand flat in the White Sea to colonize aggregates of Mytilus edulis Linnaeus, 1758 (Bivalvia: Mytilidae)

The colonization of artificially created aggregates of the mussel Mytilus edulis by organisms that inhabit an intertidal sand and mud flat was studied in a field experiment. The sediment of 40 experimental plots was cleared of macrofauna. Thirty of these plots were covered with fishing nets, on which either live mussels (ten plots, type M) or mussel dummies (ten plots, type D) were placed; on ten plots, the nets were left empty (type Z). The remaining ten plots without nets but with a cleared surface (type E) were the control. For comparison, samples were taken from the ambient intact community. After 16 days of exposure, the community on the plots differed from the ambient one. In the E-Z-D-M series, only 7 out of 29 taxa that were found in the samples differed significantly in abundance. Chironomid larvae, adults, and spat of M. edulis and Mya arenaria were most abundant on the plots with a hard substrate (Z, D, M). Adult Jaera sp., Oligochaeta, Littorina saxatilis, and Nemertea were more abundant on the type M plots. The abundance of spat of Macoma balthica and Hydrobia ulvae did not differ significantly. The results indicate that the biological activity of mussels M. edulis in dense assemblages facilitated immigration of adult animals of other species. The M. edulis aggregates either had no influence on the spat of mollusks or they attracted it as a hard substrate for settlement.     

Localized impact of livestock settlements on vegetation patterns in fir forests of Kashmir Himalaya

Among the many global drivers of ecosystem degradation, the long-term impact of livestock settlements on vegetation patterns and composition, and is one of the greatest hurdles to successful forest ecosystem restoration. In order to identify the ecological implications of human land use changes on vegetation patterns and composition, the current study was conducted for the first time in Fir Forests of Kashmir Himalaya, to illustrate how vegetation responds to livestock settlements. We took samples from forest types both near and far from livestock settlements (ALS and NLS, respectively). To collect data on forest types, we employed a systematic random sampling strategy. After evaluation of the important value index (henceforth IVI) for each plant species along with anthropogenic data of forests, we analyzed data using ordination and cluster analysis techniques. On comparative analysis, the lesser values for diversity indices have been found for at the forest types near livestock settlement. It was discovered that 36% species were unique to away from livestock settlements forest type and 18% species in near to livestock settlements forest type, but that maximum 46% of species were common to all forest types studied. Species composition was unevenly distributed along with various anthropogenic factors, according to the canonical correspondence analysis. Forests near livestock settlements were also discovered to affect species abundance and diversity by promoting the growth of weedy species. The abundant growth of weedy flora such as Cirsium falconeri, Polygonum aviculare, and Urtica dioica around livestock settlement, results in alterations of plant community composition. The findings revealed that cut trees contributed 16% of reported density at ALS forest type and considerably higher values 35% at NLS forest type, respectively. Findings of the study could be used to develop effective livelihood options and management policies for long-term forest harvest impacts in the Himalayas, resulting in the sustainable use of local forest reserves.     

Integrated archaeobotanical research into vegetation management and land use in El Llano de la Horca (Santorcaz, Madrid, central Spain)

This paper presents an integrated archaeobotanical analysis carried out at the site known as “El Llano de la Horca”, a Bronze and Late Iron Age (3rd–1st century b.c.) Carpetanian settlement in central Spain (3600?±?80 b.p.). Pollen and spore analysis indicates an open landscape dominated by the herb taxa Asteraceae, Chenopodiaceae and Poaceae with an important representation of Glomus. The combination of pollen and charcoal studies also reveals the presence of Pinus sylvestris-nigra, P. pinaster-pinea, Juniperus thurifera, Quercus faginea, Q. ilex and Q. suber as the main trees used. Occurrences of Alnus, Corylus, Fraxinus and Juglans suggest the existence of water courses nearby. The archaeobotanical data is correlated with the geographical setting and archaeological context. The evolution of settlement patterns in central Spain, as well as the economy of other Carpetanian sites, is also considered to evaluate how this territory was managed for its vegetational resources since the Bronze Age (BA). Changes are expected as a consequence of different socio-economic factors at this site, especially when the settlement became an important Carpetanian oppidum. The combined results demonstrate a subsistence system based on cereal agriculture, in which naked wheat was dominant, together with some hulled barley and some erratic occurrences of hulled wheat. Furthermore, livestock breeding and metalwork activities seem to have resulted in a significant loss of woodland in order to clear land for crop fields and cattle grazing to cope with the needs of the growing Carpetanian community.     

Species Richness of Yeast Communities in Floral Nectar of Southern Spanish Plants

Floral nectar of insect-pollinated plants often contains dense yeast populations, yet little quantitative information exists on patterns and magnitude of species richness of nectar-dwelling yeasts in natural plant communities. This study evaluates yeast species richness at both the plant community and plant species levels in a montane forest area in southern Spain, and also explores possible correlations between the incidence of different yeast species in nectar and their reported tolerance to high sugar concentrations, and between yeast diversity and pollinator composition. Yeast species occurring in a total of 128 field-collected nectar samples from 24 plant species were identified by sequencing the D1/D2 domain of the large subunit rDNA, and rarefaction-based analyses were used to estimate yeast species richness at the plant community and plant species levels, using nectar drops as elemental sampling units. Individual nectar samples were generally characterized by very low species richness (1.2 yeast species/sample, on average), with the ascomycetous Metschnikowia reukaufii and Metschnikowia gruessii accounting altogether for 84.7% of the 216 isolates identified. Other yeasts recorded included species in the genera Aureobasidium, Rhodotorula, Cryptococcus, Sporobolomyces, and Lecythophora. The shapes and slopes of observed richness accumulation curves were quite similar for the nectar drop and plant species approaches, but the two approaches yielded different expected richness estimates. Expected richness was higher for plant species-based than for nectar drop-based analyses, showing that the coverage of nectar yeast species occurring in the region would be improved by sampling additional host plant species. A significant correlation was found between incidence of yeast species in nectar and their reported ability to grow in a medium containing 50% glucose. Neither diversity nor incidence of yeasts was correlated with pollinator composition across plant species.     

Fungal community associated with adults of the chestnut gall wasp Dryocosmus kuriphilus after emergence from galls: Taxonomy and functional ecology

The diversity of the fungal community associated with adults of Dryocosmus kuriphilus following emergence was examined using HTS analysis. Ascomycota dominated the fungal core-biome community. The functional guilds of the 90 taxa forming the core-biome were assessed, demonstrating three main groups: saprotrophs, plant pathogens and entomopathogens. Twenty-nine OTUs out of 90 were resolved to species level identifying 26 different fungal species. Among these species, many were cosmopolitan or previously recorded in Europe. Ten taxa were previously recorded on chestnut, including some recognized plant pathogens associated with foliage and green tissues such as Epicoccum nigrum, Gnomoniopsis castanea, Colletotrichum acutatum, Stromatoseptoria castaneicola, Ramularia endophylla. Beauveria bassiana; within the core microbiome, Fusarium larvarum represented the most abundant entomopathogenic species. Some of these species are known to impact directly or indirectly the vitality of the insects in the galls. The chestnut blight pathogen, Cryphonectria parasitica, was never found associated with D. kuriphilus. Based on the present study, an active role for D. kuriphilus as a vector of chestnut fungal endophyte/pathogens cannot be demonstrated but neither ruled out.     

Species specific responses of common grassland plants to a generalist root herbivore (Agriotes spp. larvae)

Insect root herbivores can alter plant community structure by affecting the competitive ability of single plants. Our study aims at increasing knowledge on the impact of click beetle larvae (Elateridae, genus Agriotes) on grassland plant communities, by determining biomass responses as well as responses of the arbuscular mycorrhizal fungi (AMF) symbiosis to this widespread generalist root herbivore for eight common grassland plant species (Festuca rubra, Holcus lanatus, Poa pratensis, Achillea millefolium, Plantago lanceolata, Veronica arvensis, Medicago lupulina, Trifolium repens), belonging to three functional groups (grasses, herbs, legumes).The presence of larvae in the rhizosphere of individual plants had an overall negative effect on root biomass, which varied in degree between plant species, with more root biomass being removed from larger root systems. The effect of larvae on shoot biomass, total plant biomass and shoot/root ratio also differed in strength between plant species. Relative changes in root and total plant biomass ranged from a 71% and 55% loss, respectively, in V. arvensis to an 11% and 1% increase in T. repens, but were not related to root- or plant size. Root colonization by AMF and the length of extraradical AMF hyphae were not affected by larvae. The plant's functional group did not determine the response of the plant to feeding by larvae. Growth of larvae was positively correlated with root biomass, but did not depend on plant species or group identity.The results confirm the generalist nature of Agriotes spp. larvae, which depend on sufficient root quantity and are likely to feed most on those plant species whose roots are most abundant in their habitat. Their effect on the plant community may be generated through the ability of the respective plant species to cope with the herbivore damage, with tolerances being plant species rather than plant group specific.     

Characterization of rhizosphere prokaryotic diversity in a horizontal subsurface flow constructed wetland using a PCR cloning-sequencing based approach

Performance of biological wastewater treatment systems may be related to the composition and activity of microbial populations they contain. However, little information is known regarding microbial community inhabiting these ecosystems. The purpose of this study was to investigate archaeal and bacterial diversity, using cultivation-independent molecular techniques, in a constructed wetland receiving domestic wastewater. Two 16S rRNA gene libraries were constructed using total genomic DNA and amplified by PCR using primers specific for archaeal and bacterial domains. A high microbial diversity was detected. The Proteobacteria phylum is the most abundant and diversified phylogenetic group representing 31.3 % of the OTUs, followed by the Bacteroidetes (14.8 %), Planctomycetales (13.8 %), Actinobacteria (12 %), and Chloroflexi (8.2 %). Sequences affiliated with minor phylogenetic divisions such as the TM7, Nitrospira, OP10, and BRC1 are represented by <6 % of total OTUs. The Archaea domain was represented by the Thaumarchaeota phylum dominated by the Candidatus Nitrososphaera genus.     

Coexistence of Lactic Acid Bacteria and Potential Spoilage Microbiota in a Dairy Processing Environment

Microbial contamination in food processing plants can play a fundamental role in food quality and safety. In this study, the microbiota in a dairy plant was studied by both 16S rRNA- and 26S rRNA-based culture-independent high-throughput amplicon sequencing. Environmental samples from surfaces and tools were studied along with the different types of cheese produced in the same plant. The microbiota of environmental swabs was very complex, including more than 200 operational taxonomic units with extremely variable relative abundances (0.01 to 99%) depending on the species and sample. A core microbiota shared by 70% of the samples indicated a coexistence of lactic acid bacteria with a remarkable level of Streptococcus thermophilus and possible spoilage-associated bacteria, including Pseudomonas, Acinetobacter, and Psychrobacter, with a relative abundance above 50%. The most abundant yeasts were Kluyveromyces marxianus, Yamadazyma triangularis, Trichosporon faecale, and Debaryomyces hansenii. Beta-diversity analyses showed a clear separation of environmental and cheese samples based on both yeast and bacterial community structure. In addition, predicted metagenomes also indicated differential distribution of metabolic pathways between the two categories of samples. Cooccurrence and coexclusion pattern analyses indicated that the occurrence of potential spoilers was excluded by lactic acid bacteria. In addition, their persistence in the environment can be helpful to counter the development of potential spoilers that may contaminate the cheeses, with possible negative effects on their microbiological quality.     

Cellulose-Enriched Microbial Communities from Leaf-Cutter Ant (Atta colombica) Refuse Dumps Vary in Taxonomic Composition and Degradation Ability

Deconstruction of the cellulose in plant cell walls is critical for carbon flow through ecosystems and for the production of sustainable cellulosic biofuels. Our understanding of cellulose deconstruction is largely limited to the study of microbes in isolation, but in nature, this process is driven by microbes within complex communities. In Neotropical forests, microbes in leaf-cutter ant refuse dumps are important for carbon turnover. These dumps consist of decaying plant material and a diverse bacterial community, as shown here by electron microscopy. To study the portion of the community capable of cellulose degradation, we performed enrichments on cellulose using material from five Atta colombica refuse dumps. The ability of enriched communities to degrade cellulose varied significantly across refuse dumps. 16S rRNA gene amplicon sequencing of enriched samples identified that the community structure correlated with refuse dump and with degradation ability. Overall, samples were dominated by Bacteroidetes, Gammaproteobacteria, and Betaproteobacteria. Half of abundant operational taxonomic units (OTUs) across samples were classified within genera containing known cellulose degraders, including Acidovorax, the most abundant OTU detected across samples, which was positively correlated with cellulolytic ability. A representative Acidovorax strain was isolated, but did not grow on cellulose alone. Phenotypic and compositional analyses of enrichment cultures, such as those presented here, help link community composition with cellulolytic ability and provide insight into the complexity of community-based cellulose degradation.     

Above- and belowground effects of plant-soil feedback from exotic Solidago canadensis on native Tanacetum vulgare

Plant-soil feedback responses for native and invasive plant species are well documented, but little is known about how feedback effects from the soil biota community affect plant interactions with herbivores. Here we examine whether changes of the soil biota community by the successful invader Solidago canadensis influence growth and herbivore susceptibility of two coexisting native plant species (Tanacetum vulgare, Melilotus albus). Root zone soil from two different habitat types (‘urban’ and ‘suburban’) was collected and used as inocula in a plant-soil feedback study. Each plant species was grown either in its own soil biota community or with the community with a history from the competitive invasive or native plant species. To identify potential drivers of responses to the different soil biota communities, we analyzed root colonization by arbuscular mycorrhizal fungi and dark-septate endophytes (DSE), and the community composition of soil inhabiting nematodes at the end of our experiment. Results show that S. canadensis and M. albus were not affected by soil history. In contrast, T. vulgare showed increased plant growth in ‘foreign’ soil derived from S. canadensis root zone compared with its ‘home’ soil suggesting a growth promotion by the soil biota community of S. canadensis. From the examined drivers, the abundance of DSE explained the growth response of T. vulgare to the S. canadensis soil biota community best. However, shoot herbivory by banded snails (Cepaea nemoralis, C. hortensis) was not affected by soil history, but by the habitat type where the soil inocula originated. Our study shows that a native plant species may profit from the presence of an invasive competitor mediated by changes in the soil biota community.     

Environment and agriculture of the transitional period from the Late Bronze to early Iron Age in the eastern Baltic: an archaeobotanical case study of the lakeshore settlement Luokesa 1, Lithuania

Prehistoric agriculture and vegetation in Lithuania have so far been reconstructed largely using palynological data. This paper reports the archaeobotanical investigation of macroremains from the Late Bronze-early Iron Age (LBA–EIA) lakeside settlement Luokesa 1 (L1) in eastern Lithuania, with the aim of elucidating the settlement’s history and crop diversity. The single phase settlement was fortified with an onshore palisade and is dated between 625 and 535 cal. bc. Samples were taken along a land to lake transect, and in the centre of L1. The stratigraphy consisted of three distinct layers: lake marl, cultural deposit and sandy limnic sediment on top. The plant spectrum shows that L1 was constructed on an exposed morainic shoal. It was surrounded by woodland, meadows, fields/gardens, ruderal habitats and riverine vegetation. Accumulated cultural deposits consisted mainly of manure (litter, fodder and dung of sheep/goat), with rubbish, sweepings from the houses or remains of the on-site vegetation. The crops were Panicum miliaceum, Triticum spelta, T. dicoccon, Hordeum vulgare s.l., Pisum sativum and Camelina sativa, the latter being the first prehistoric evidence in Lithuania. The trophic state of the lake increased during the occupation period. After the abandonment of the settlement the ruins decayed until the lake flooded the site. The results are discussed in a broader context of the LBA/EIA cultures in northern Central Europe.     

Impacts of seedling herbivory on plant competition and implications for species coexistence

Background and Aims

Although the causes and consequences of seedling herbivory for plant community composition are well understood, the mechanisms by which herbivores influence plant species recruitment to the established phase remain less clear. The aim was to examine how variation in the intensity of seedling herbivory interacts with growth-defence trade-offs and herbivore feeding preferences to affect plant community development.

Methods

Using 14-d-old seedlings of Trifolium pratense and T. repens, relative growth and susceptibility to herbivory by the snail Helix aspersa was quantified to elucidate putative growth-defence trade-offs for these species. Then mixed assemblages of 14-d-old Trifolium seedlings were exposed to herbivory by zero, two, five or ten snails and determined how variation in the intensity of herbivory affected competitive interactions into the mature phase (as measured by total plant biomass at 120 d old).

Key Results

In the absence of herbivory, communities were dominated by T. pratense; a result expected on the basis that it yielded larger and presumably more competitive seedlings. However, when seedlings were exposed to herbivory, the balance of competition shifted. At low levels of herbivory (two snails), both Trifolium species contributed equally to total plant biomass. More intense herbivory (five snails) resulted in almost total mortality of T. pratense and dominance of the mature community by T. repens. The most intense herbivory (ten snails) effectively removed all seedlings from the experimental community.

Conclusions

The study illustrates a mechanism whereby spatio-temporal fluctuations in seedling herbivory, when coupled with species-specific variation in competitive ability and sensitivity to herbivore attack, can differentially influence plant recruitment into the mature phase. This mechanism may be a key element in our attempts to understand plant species coexistence, since fluctuations in plant recruitment are fundamental to the many theories that view coexistence as a consequence of a spatio-temporal lottery for dominance over regeneration micro-sites.Key words: Growth-defence trade-off, lottery models, plant–animal interactions, plant size variability, seedling acceptability, seedling defence, spatio-temporal niches, Trifolium pratense, Trifolium repens     

Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce

The presence, size and importance of bacterial communities on plant leaf surfaces are widely appreciated. However, information is scarce regarding their composition and how it changes along geographical and seasonal scales. We collected 106 samples of field-grown Romaine lettuce from commercial production regions in California and Arizona during the 2009–2010 crop cycle. Total bacterial populations averaged between 10⁵ and 10⁶ per gram of tissue, whereas counts of culturable bacteria were on average one (summer season) or two (winter season) orders of magnitude lower. Pyrosequencing of 16S rRNA gene amplicons from 88 samples revealed that Proteobacteria, Firmicutes, Bacteroidetes and Actinobacteria were the most abundantly represented phyla. At the genus level, Pseudomonas, Bacillus, Massilia, Arthrobacter and Pantoea were the most consistently found across samples, suggesting that they form the bacterial ‘core'' phyllosphere microbiota on lettuce. The foliar presence of Xanthomonas campestris pv. vitians, which is the causal agent of bacterial leaf spot of lettuce, correlated positively with the relative representation of bacteria from the genus Alkanindiges, but negatively with Bacillus, Erwinia and Pantoea. Summer samples showed an overrepresentation of Enterobacteriaceae sequences and culturable coliforms compared with winter samples. The distance between fields or the timing of a dust storm, but not Romaine cultivar, explained differences in bacterial community composition between several of the fields sampled. As one of the largest surveys of leaf surface microbiology, this study offers new insights into the extent and underlying causes of variability in bacterial community composition on plant leaves as a function of time, space and environment.     

Settlement of bivalve spat on artificial collectors in Eyjafjordur, North Iceland

The seasonal pattern of bivalve spat settlement in Eyjafjordur, North Iceland, was investigated using artificial collectors of monofilament netting over 14 months (March 1998–January 2000) at 5, 10 and 15 m depth. SCUBA divers replaced the collectors at 4-weekly intervals. Twelve bivalve species settled on the collectors but only Mytilus edulis and Hiatella arctica were present throughout the year; they were the most abundant bivalve taxa. Of the remaining species, only Chlamys islandica, Heteranomia spp., Arctica islandica, Serripes groenlandicus and Mya spp. were sufficiently abundant to enable statistical analysis. All settled in late summer and autumn. Peak settlement of M. edulis, in September, consisted mainly of primary settlers (0.25–0.5 mm) although secondary settlers (>0.5 mm) were present in all samples. Mytilus edulis settled mostly at 5 m depth, especially larger individuals, possibly reflecting stronger currents at shallower depth and the proximity of mussel beds in the intertidal zone. Primary (<1 mm) and secondary H. arctica settlers (>1 mm) were present in most months, with the former being most numerous in September, 1999; settlement was equally abundant at 5 and 10 m depth. Primary settlement of C. islandica and S. groenlandicus occurred in autumn (mainly in September), and secondary settlers were very scarce and only seen in winter. Arctica islandica, Heteranomia spp. and Mya spp. settled mainly in September 1999 at 10 m depth, except for A. islandica, which was more numerous in August.     

Temporal Changes in the Ectomycorrhizal Community in Two Soil Horizons of a Temperate Oak Forest

The species structure of an ectomycorrhizal (ECM) community was assessed monthly for 15 months in the two horizons (A1 and A2) of an oak temperate forest in northeastern France. Ectomycorrhizal species were identified each month by internal transcribed spacer sequencing. Seventy-five fungal symbionts were identified. The community was dominated by Tomentellaceae, Russulaceae, Cortinariaceae, and Boletales. Four species are abundant in the study site: Lactarius quietus, Tomentella sublilacina, Cenococcum geophilum, and Russula sp1. The relative abundance of each species varied depending on the soil horizon and over time. Some species, such as L. quietus, were present in the A1 and A2 horizons. C. geophilum was located particularly in the A2 horizon, whereas T. sublilacina was more abundant in A1. Some species, such as Clavulina sp., were detected in winter, while T. sublilacina and L. quietus were present all year long. Our results support the hypothesis that a rapid turnover of species composition of the ECM community occurs over the course of a month. The spatial and temporal unequal distribution of ECM species could be explained by their ecological preferences, driven by such factors as root longevity, competition for resources, and resistance to environmental variability.     

Effects of ecological environment and host genotype on the phyllosphere bacterial communities of cigar tobacco (Nicotiana tabacum L.)

Microorganisms of plant phyllosphere play an important role in plant health and productivity and are influenced by abiotic and biotic factors. In this study, we investigated the phyllosphere bacterial communities of three cigar tobacco varieties cultivated in Guangcun (GC) and Wuzhishan (WZS), Hainan, China. Metagenomic DNA was extracted from tobacco leaf samples and sequenced by 16S rDNA amplicon sequencing. Our results showed that bacterial communities of cigar tobacco phyllosphere in GC exhibited remarkably higher alpha diversity than that in WZS. There was slight effect of tobacco genotype variations on the alpha diversity in both cultivation sites, and beta diversity and structure of bacterial community were not influenced significantly by the cultivation sites and tobacco varieties. Statistical analyses of species diversity unraveled that the dominant species in bacterial communities of cigar tobacco phyllosphere among all these samples were phylogenetically affiliated to Proteobacteria and Cyanobacteria. At the genus level, the most abundant microorganism was Limnobacter, followed by Brevundimonas, unidentified_Cyanobacteria, and Pseudomonas. Additionally, environmental conditions except for humidity were negatively correlated with the relative abundance of bacterial genera. Further analyses revealed that influence of site‐specific factors on tobacco bacterial community was relatively higher than genotype‐specific factors. In short, this study may contribute to the knowledge base of practical applications of bacterial inoculants for tobacco leaf production.     

Bacterial characterization of Beijing drinking water by flow cytometry and MiSeq sequencing of the 16S rRNA gene

Flow cytometry (FCM) and 16S rRNA gene sequencing data are commonly used to monitor and characterize microbial differences in drinking water distribution systems. In this study, to assess microbial differences in drinking water distribution systems, 12 water samples from different sources water (groundwater, GW; surface water, SW) were analyzed by FCM, heterotrophic plate count (HPC), and 16S rRNA gene sequencing. FCM intact cell concentrations varied from 2.2 × 10³ cells/mL to 1.6 × 10⁴ cells/mL in the network. Characteristics of each water sample were also observed by FCM fluorescence fingerprint analysis. 16S rRNA gene sequencing showed that Proteobacteria (76.9–42.3%) or Cyanobacteria (42.0–3.1%) was most abundant among samples. Proteobacteria were abundant in samples containing chlorine, indicating resistance to disinfection. Interestingly, Mycobacterium, Corynebacterium, and Pseudomonas, were detected in drinking water distribution systems. There was no evidence that these microorganisms represented a health concern through water consumption by the general population. However, they provided a health risk for special crowd, such as the elderly or infants, patients with burns and immune‐compromised people exposed by drinking. The combined use of FCM to detect total bacteria concentrations and sequencing to determine the relative abundance of pathogenic bacteria resulted in the quantitative evaluation of drinking water distribution systems. Knowledge regarding the concentration of opportunistic pathogenic bacteria will be particularly useful for epidemiological studies.     

Archaeobotanical evidence of the function of four-post structures in Denmark

Through archaeobotanical analysis and discussion of the abundant charred macrofossils in samples from a burnt down four-post structure at an Early Roman Iron Age farmstead (ad 1-150) at Kulerup, Sjælland (Zealand) in Denmark, this article aims to shed new light upon the functions of this type of structure in Denmark. Based on the analysis of the distribution of charred plant remains there, it is argued that at the time the structure was destroyed by fire it was being used for storing cereals, which were possibly unthreshed. Supplemented by archaeological evidence as well as archaeobotanical records from a number of other Bronze and Iron Age four-post structures from northwest Europe, the plant macrofossil assemblage from Kulerup reinforces the interpretation of these structures for storage of plant products. Four- and multiple post structures are known as parts of farm units well into historical times, and so comparative historical records are also considered as a source of information about their primary functions.