基于GISH的甘蔗与斑茅F1染色体遗传与核型分析

斑茅在甘蔗育种的利用是现代甘蔗育种种质创新的热点,育种者期望把斑茅中优异的特性通过杂交渗透到甘蔗中。甘蔗与斑茅的F1是斑茅利用研究的难点也是基础。本研究利用基因组原位杂交技术(GISH)分析甘蔗与斑茅的F1染色体构成和核型,探讨甘蔗与斑茅F1染色体的遗传行为。GISH结果表明,甘蔗与斑茅杂交F1的染色体众数68~69条,其中40条来自甘蔗热带种Badila,28~29条来自海南斑茅,未发现有染色体的交换或易位现象。参试材料大部分染色体都属于中部着丝点(m)的染色体,少数为近中部着丝点(sm),YCE95-41核型属2B型,其余的核型都为1B型。甘蔗与斑茅的染色体按n+n的方式传递给F1,本研究结果为斑茅种质在甘蔗育种中的利用及其杂交后代染色体细胞遗传研究提供参考依据。     

甘蔗、斑茅及其杂种的过氧化物酶同工酶

甘蔗属(Saccharum L.)主要包括热带种(S.officinarum L.)、中国种(S.sinensisRoxb)、印度种(S.barberi Jeswiet)、“割手密”种(S.spontaneum L.)和大茎野生种(S.robustum Brandes)。甘蔗属的近缘植物——斑茅(Arundinaceum Retz)应该划归甘蔗属、蔗茅属(Erianthus Michx)或另立一属,意见不一。Dutt 等将斑茅列入蔗茅属,耿以礼等则将其划归甘蔗属。甘蔗糖业栽培的甘蔗(糖蔗)是热带种与割手密种、大     

甘蔗-滇蔗茅杂交F_1花粉母细胞减数分裂过程GISH分析

研究甘蔗属与滇蔗茅属间远缘杂交F1染色体遗传行为具有重要科学意义,可为发掘利用滇蔗茅野生优异基因资源提供细胞学依据。本研究采用常规压片技术对可育父本及不育杂交F1花粉母细胞减数分裂过程进行比较观察,结果显示可育父本云南95-19减数分裂正常,而不育杂交F1分裂异常;进一步对F1花粉母细胞减数分裂过程进行基因组荧光原位杂交(GISH,genome in situ hybridization)分析,结果表明:滇蔗茅与甘蔗属热带种的亲缘关系较远,双亲染色体在F1细胞中不能进行同源配对,终变期,15条滇蔗茅染色体以单价体形式存在,花粉母细胞减数分裂细胞中存在滞后染色体、染色体丢失和不均衡分离现象。甘蔗-滇蔗茅属间远缘杂交F1花粉母细胞减数分裂异常因而杂交F1花粉完全败育。     

斑茅割手密复合体杂交利用过程野生特异基因遗传分析

揭示斑茅割手密复合体在杂交利用过程中的斑茅、割手密野生特异基因在各世代的遗传规律,为利用斑割复合体创制甘蔗育种新亲本提供理论依据。利用AFLP-PCR分子标记结合毛细管电泳技术对斑割复合体在杂交利用过程中的斑茅、割手密野生特异基因在各世代的传递动态进行分析,并研究它们之间的遗传关系。29对AFLP引物组合共扩增出3695个位点,多态性比例为97.89%。斑茅和割手密对斑割复合体的遗传贡献率分别为43.96%和56.04%。斑茅特异位点在F1、BC1和BC2 3个世代的平均遗传率分别为8.25%、1.90%和0.63%,割手密特异位点在F1、BC1和BC2 3个世代的平均遗传率分别为16.98%、2.40%和0.21%,特异遗传物质均呈逐代减少趋势。比较不同世代甘蔗栽培种亲本遗传到后代的特异位点比率,F1的GT02-761特异位点比率最高,BC1的GT05-2743特异位点比例平均高达92.75%,BC2的ROC23遗传率最低,为49.09%,FN39遗传率最高,达94.32%。聚类分析结果表明斑割复合体偏向父本遗传,斑割复合体杂交后代偏向甘蔗栽培种遗传,与分子遗传关系分析结果一致。研究表明,经过3代的遗传重组,斑割复合体后代的遗传物质与斑割复合体相比已发生了很大的改变;研究明确了斑茅、割手密2个亲本在3个世代的遗传贡献规律,为进一步的杂交选育提供理论支持。     

滇蔗茅杂交F_1双抗SCSMV和SrMV鉴定与评价

以我国蔗区甘蔗花叶病的2种主要病原甘蔗条纹花叶病毒分离物(SCSMV-JP1,Gen Bank登录号JF488064)和高粱花叶病毒分离物(Sr MV-HH,Gen Bank登录号DQ530434)为接种毒源,采用人工切茎接种和RT-PCR检测相结合的方法,于2015-2016年2次对由热带种路打士与滇蔗茅云滇95-19杂交获得的41份滇蔗茅杂交F_1及亲本进行了双抗SCSMV和Sr MV鉴定与评价。结果表明,41份滇蔗茅杂交F_1及亲本中,对SCSMV表现1级高抗到3级中抗的有23份,占53.49%,4级感病到5级高感的有20份,占46.51%;对Sr MV表现1级高抗到3级中抗的有31份,占72.09%,4级感病到5级高感的有12份,占27.91%。综合分析结果显示,10份滇蔗茅杂交F_1对SCSMV和Sr MV均表现1~2级抗病,占23.26%,其中云09-604、云09-607、云09-619、云09-633、云09-656、云滇95-19等6份滇蔗茅杂交F_1对2种病毒均表现为1级高抗,占13.95%。研究结果明确了41份滇蔗茅杂交F_1及亲本对甘蔗花叶病2种主要致病病原的抗性,筛选出10份双抗SCSMV和Sr MV的滇蔗茅杂交F_1,为深入开展抗甘蔗花叶病育种提供了优良抗源种质和参考依据。     

甘蔗杂种的染色体和RAPD鉴定研究

采用体细胞染色体计数和RAPD (Random Amplified Polymorphism DNA) 分子标记的方法鉴定甘蔗与蔗茅属间杂交种F1的真实性.结果表明,杂种F1材料01/47、01/85、01/120的2n＝80～82,染色体遗传方式为n 2n.用110个随机引物进行RAPD扩增,63个引物可获得双亲的RAPD多态性,其中3个引物OPC-19、OPE-2、OPF-4可在杂种F1材料01/64和01/120的RAPD扩增标记中显示出双亲的特征谱带,分别为父本3500bp和母本1300bp、父本1350bp和母本900bp、父本550bp和母本900bp.     

不同基因型割手密无性系的核型分析

为探讨不同基因型割手密无性系间的亲缘关系,采用酶解去壁低渗法对不同基因型的割手密材料进行核型分析。10份供试材料的绝大多数染色体为中部着丝点(m)染色体,少数为近中部着丝点(sm)染色体及正中部着丝点(M)染色体,部分材料中还具有端部着丝点(T)染色体及近端部着丝点区染色体(t);依据分析结果总结了参试材料的核型公式;参试材料中有2份为1B核型、7份为2B核型、1份为2C核型。参试材料间的核型均存在差异且不对称。     

80份甘蔗种质RAMP标记遗传多样性分析

采用RAMP分子标记技术对80份甘蔗种质(32份祖亲种、48份栽培品种或品系)的遗传基础进行了分析。从30对引物组合中筛选出4对多态性较强引物,构建了甘蔗80份种质的RAMP指纹图谱,这四对引物组合共扩增出84条带,其多态性为91.7%。80份种质的遗传相似系数变化范围在0.433～0.988,平均0.710。聚类分析表明,随着相似系数结合线的不同,可分别将参试的甘蔗种质从属间(甘蔗属与斑茅种)、野生种(割手密种、大茎野生种、印度种、中国种)与栽培种(热带种)间、栽培种与杂交栽培品种(或品系)间区别开来。各祖亲种与杂交栽培品种(或品系)的遗传相似性由大到小依次为热带种>印度种和中国种>大茎野生种＞云南割手密种＞其它割手密种＞斑茅。另外,本试验首次利用RAMP标记,获得了部分热带种、野生种及斑茅种特异片段,并发现这些特异片段能不同程度地在具有其血缘的栽培种中得到传递。     

5S rDNA在不同倍性割手密染色体上的物理定位

割手密作为甘蔗育种中重要的野生亲本,具有适应范围广、抗病和抗逆性强的优势。为了确定5S r DNA在不同倍性割手密基因组中的分布位点的数目、区域与拷贝数,本研究应用荧光原位杂交技术在云南82-114(2n=10x=80)和福建89-1-19(2n=13x=104)两份不同倍性割手密材料的间期核和中期染色体上进行5S r DNA定位研究。结果表明:5S r DNA在这两个割手密无性系中的位点数、分布位置以及信号的强弱变化较大。其中,云南82-114割手密有10个信号位点,且基本都在着丝粒附近;福建89-1-19割手密有13个信号位点,部分靠近着丝粒,还有少部分在着丝粒附近的长臂上;同一细胞中不同染色体上的杂交信号有强弱之分,差异明显;而且割手密的5S r DNA位点数与倍性具有相关性,在染色体上没有固定的分布模式,5S r DNA在不同染色体上的拷贝数存在较大的差异。研究结果揭示了割手密染色体结构多样性和5S r DNA拷贝数多样性,可在分子水平上为染色体提供有效的识别标记,有助于物种的进化及亲缘关系的分析。     

中国西南六种广义拂子茅属( 禾本科) 植物的染色体数目

广义拂子茅属( Calamagrostis) 是一个世界温带广布的大属, 有些作者又分为拂子茅属和野青茅属, 但近期的研究表明处理为一个属较为合适。中国共有37 种广义拂子茅属植物, 但至今没有任何染色体的研究。本文报道了其中产于中国西南6 种野青茅的染色体数目, 其中Deyeuxia petelotii 4 个居群, D1 diffusa, D1 moupinensis, D1 nivicola 和D1f lavens 各一个居群都是四倍体( 2n= 4x= 28) , D1 neglecta 为六倍体( 2n= 6x= 42) 。根据广义拂子茅属植物染色体倍性特征, 该属植物中至今未发现二倍体, 四倍体是该属中倍性最低和最普遍的, 广义拂子茅属的演化很可能是在四倍体的水平上进行的。由于以上几个四倍体种均是狭域分布的类群, 所以可能是由四倍体的祖先隔离分化形成的。     

甘蔗与斑茅割手密复合体杂交后代的分子标记鉴定

为有效利用甘蔗野生种质拓宽甘蔗遗传基础,本研究利用甘蔗与斑茅割手密复合体进行杂交,同时应用序列相关扩增多态性(SRAP)和微卫星(SSR)分子标记技术鉴定其后代。两种分子标记鉴定结果相互印证表明:3个杂交组合的后代中,经表型鉴定含斑茅血缘的34个后代为真杂种。该真杂种后代为进一步综合利用斑茅、割手密的优异基因改良甘蔗品种提供了优良的创新种质。     

Using genomic slot blot hybridization to assess intergeneric Saccharum x Erianthus hybrids (Andropogoneae - Saccharinae).

The use of genomic slot blot hybridization enabled the differentiation of hybrids from selfs in Saccharum x Erianthus intergeneric crosses in which Saccharum was used as the female parent. Based on the genomic in situ hybridization technique, slot blots of DNA from the parents and the progeny were blocked with the Saccharum parent DNA and hybridized with the labelled male Erianthus genomic DNA. This technique allowed a rapid screening for hybrids and was sensitive enough to detect a 1/20 dilution of Erianthus in Saccharum DNA, which should enable the detection of most partial hybrids. The genomic slot blot hybridization technique was shown to be potentially useful for assessing crosses involving Saccharum species with either Old World Erianthus section Ripidium or North American Erianthus (= Saccharum) species. The effectiveness of the technique was assessed on 144 progeny of a Saccharum officinarum x Erianthus arundinaceus cross, revealing that 43% of the progeny were selfs. The importance of this test as a tool to support intergeneric breeding programs is discussed.     

Species-specific accumulation of interspersed sequences in genus Saccharum

The genus Saccharum consists of two wild and four cultivated species. Novel interspersed sequences were isolated from cultivated sugar cane S. officinarum. These sequences were accumulated in all four cultivated species and their wild ancestral species S. robustum, but were not detected in the other wild species S. spontaneum and the relative Erianthus arundinaceus. The species-specific accumulation of interspersed sequences would correlate to the domestication of sugar canes.     

Dormancy and proliferation in Saccharum officinarumxS. spontaneum hybrids which differ in the number of the introgressed S. spontaneum chromosomes.

Proliferating cells remain transiently blocked at different cycle compartments until specific stressors are removed or until the cells become adapted to their presence. This paper investigates the efficiency of cycle blocks in three sugarcane hybrids with the full noble cane (Saccharum officinarum) genome (2n=8x=80) but differing in the number of introgressed S. spontaneum (2n=8x=64) chromosomes. The My5514, B42231 and C236-51 cultivars possess 20, 30 and 40 additional S. spontaneum chromosomes, respectively. Flow cytometry showed that over 90% of cells were accumulated with a 2C DNA content in their dormant primordia. The presence of S. spontaneum chromosomes decreased the low stringency of the 4C block. The greater the number of these chromosomes, the lower was the number of quiescent cells with a 4C DNA content (P<0.05). Shortly after stimulation of the primordia (85% relative humidity and 30 degrees C), i.e. in the 2 mm long roots, a negative correlation was found between the number of introgressed S. spontaneum chromosomes and the frequency of cells undergoing replication and mitosis. On the other hand, when roots were already proliferating under steady-state conditions (15 mm long roots) the more S. spontaneum chromosomes the cells possessed, the longer the relative time it took for all chromosomes to replicate and segregate, and the longer the relative time they spent in G(2), with the 4C DNA content. The presence of S. spontaneum chromosomes seems to be recognized by these proliferating cells as a stressor which preferentially activates checkpoint pathways operating at the second half of the cycle, but not at its onset.     

SCoT分子标记在割手密遗传图谱构建中的应用

本研究以割手密GXS85-30×GXS87-16的杂交后代为材料,应用目标起始密码子多态性(SCoT)分子标记对杂交后代进行杂种鉴定,获得由157个单株组成的F1杂种群,同时对比SCoT、AFLP和SSR分子标记在割手密基因组多态性分析和获得分离标记的效果,证实SCoT在扩增DNA多态性上优于SSR分子标记,在获取分离标记上优于AFLP分子标记,验证了SCoT分子标记技术在割手密遗传分析中的应用效果,为割手密遗传分析和遗传图谱构建提供了一种新型高效的目的基因分子标记技术。     

RFLP Mapping in Cultivated Sugarcane (Saccharum Spp.): Genome Organization in a Highly Polyploid and Aneuploid Interspecific Hybrid

Sugarcane cultivars are polyploid, aneuploid, interspecific hybrids between the domesticated species Saccharum officinarum and the wild relative S. spontaneum. Cultivar chromosome numbers range from 100 to 130 with ~10% contributed by S. spontaneum. We have undertaken a mapping study on the progeny of a selfed cultivar, R570, to analyze this complex genome structure. A set of 128 restriction fragment length polymorphism probes and one isozyme was used. Four hundred and eight markers were placed onto 96 cosegregation groups, based on linkages in coupling only. These groups could tentatively be assembled into 10 basic linkage groups on the basis of common probes. Origin of markers was investigated for 61 probes and the isozyme, leading to the identification of 80 S. officinarum and 66 S. spontaneum derived markers, respectively. Their distribution in cosegregation groups showed better map coverage for the S. spontaneum than for the S. officinarum genome fraction and occasional recombination between the two genomes. The study of repulsions between markers suggested the prevalence of random pairing between chromosomes, typical of autopolyploids. However, cases of preferential pairing between S. spontaneum chromosomes were also detected. A tentative Saccharum map was constructed by pooling linkage information for each linkage group.     

Molecular contribution to selection of intergeneric hybrids between sugarcane and the wild species Erianthus arundinaceus.

Erianthus arundinaceus has great potential as a germplasm source for better ratoonability, vigour, tolerance to environmental stresses, and disease resistance in sugarcane. Many unsuccessful attempts have been made to introduce these characters into modern sugarcane cultivars. We report on significant progress made since molecular tools were implemented. Sequence-tagged PCR, revealing size variation in the 5S rDNA cluster, was performed on intact leaf tissue to identify genuine hybrids six weeks after germination. This early screening of seedlings avoids the loss of genuine hybrids due to competition with selfed progeny. Of 96 crosses made involving female Saccharum officinarum or sugarcane cultivars (Saccharum spp.) and male E. arundinaceus, 26 were fertile producing 1328 seedlings. Thirty-seven genuine hybrids were unequivocally identified but only 19 have survived. Genuine hybrids were produced from only three crosses, all involving S. officinarum as the female parent. Chromosome elimination was observed in all seven hybrids analyzed using genomic in situ hybridization (GISH). Very little cross-hybridization was observed between the genomes of the two species after GISH, confirming recent molecular studies which showed that E. arundinaceus is quite distant from the genus Saccharum. The major limitation in the introgression of E. arundinaceus resides now in the apparent sterility of the hybrids.     

Quantitative chromosome map of the polyploid Saccharum spontaneum by multicolor fluorescence in situ hybridization and imaging methods

Somatic chromosomes of a wild relative of sugarcane (Saccharum spontaneum L.) anther culture-derived clone (AP 85-361, 2n=32) were identified and characterized by computer-aided imaging technology and molecular cytological methods. The presence of four satellite chromosomes and four nearly identical chromosome sets suggests that the clone is a tetrahaploid with the basic number x=8. A quantitative chromosome map, or idiogram, was developed using image analysis of the condensation pattern (CP) at the prometaphase stage of somatic chromosomes. The 45S and 5S ribosomal RNA gene (rDNA) loci were simultaneously visualized by multi-color fluorescence in situ hybridization (McFISH) and precisely localized to the regions of 3p3.1 and 6q1.3 on the idiogram. The simultaneous visualization of two sets of four ribosomal RNA genes confirms tetraploidy of this clone. This conclusion is consistent with results of molecular marker mapping. The quantitative chromosome map produced will become the foundation for genome analyses based on chromosome identity and structure. Previously impossible identification of small chromosomes and untestable hypotheses about the polyploid nature of plants can now be settled with these two approaches of quantitative karyotyping and FISH.