好氧甲烷氧化菌生理生态特征及其在自然湿地中的群落多样性研究进展

甲烷氧化菌是一类可以利用甲烷作为唯一碳源和能源的细菌,在全球变化和整个生态系统碳循环过程中起着重要的作用。近年来,对甲烷氧化菌的生理生态特征及其在自然湿地中的群落多样性研究取得了较大进展。在分类方面,疣微菌门、NC10门及两个丝状菌属甲烷氧化菌的发现使其分类体系得到了进一步的完善;在单加氧酶方面,发现甲烷氧化菌可以利用pM MO和sM MO两种酶进行氧化甲烷的第一步反应,Ⅱ型甲烷氧化菌中pM MO2的发现证实甲烷氧化菌可以利用这种酶氧化低浓度的甲烷;在底物利用方面,已经发现了越来越多的兼性营养型甲烷氧化菌,证实它们可以利用的底物比之前认为的更广泛,其中包括乙酸等含有碳碳键的化合物;在生存环境方面,能在不同温度、酸度和盐度的环境中生存的甲烷氧化菌不断被分离出来。全球自然湿地甲烷氧化菌群落多样性的研究目前主要集中在北半球高纬度的酸性泥炭湿地,Ⅱ型甲烷氧化菌Methylocystis、Methylocella和Methylocapsa是这类湿地主要的甲烷氧化菌类群,尤其以Methylocystis类群最为广泛,而Ⅰ型甲烷氧化菌尤其是Methylobacter在北极寒冷湿地中占优势。随着高通量测序时代的到来和新的分离技术的发展,对甲烷氧化菌的现有认识将面临更多的挑战和发展。     

Exploring methanotroph diversity in acidic northern wetlands: Molecular and cultivation-based studies

Acidic wetlands of the northern hemisphere are an important source of methane, a major greenhouse gas. The taxonomic identity of the aerobic methanotrophic bacteria, which colonize these environments and reduce the potential flux of methane to the atmosphere, has remained elusive for a long time. Both cultivation-independent molecular approaches and cultivation-based studies have been used to identify methanotrophs in this acidic habitat. It was shown that acidic peat is colonized mainly by methanotrophic representatives of the Alphaproteobacteria: Methylocystis spp., Methylocella spp. and Methylocapsa spp. Novel methanotrophic isolates from acidic wetlands display a number of unique characteristics and metabolic traits including unusual cell ultrastructure and fatty acid composition, ability to utilize some multicarbon compounds as growth substrates, and new regulatory mechanisms of methane oxidation. Several other methanotroph populations, which have been detected in acidic peat by molecular approaches but have so far eluded isolation, represent a challenge for further cultivation studies.     

Abundance and diversity of birch‐feeding leafminers along latitudinal gradients in northern Europe

Latitudinal patterns in biotic interactions, including herbivory, have been widely debated during the past years. In particular, recent meta‐analysis questioned the hypothesis that herbivory increases from the poles towards the equator. Our study was designed to verify this hypothesis by exploring latitudinal patterns in abundance and diversity of birch‐feeding insect herbivores belonging to the leafminer guild in northern Europe, from 59° to 69°N. We collected branches from five mature trees of two birch species (Betula pendula and B. pubescens) at each study site (ten sites for each of five latitudinal gradients) twice per season (in early and late summer of 2008–2011) and attributed all mines found on leaves of these branches to a certain taxon of insects. Latitudinal patterns were quantified by calculating Spearman rank correlation coefficients between both abundance and diversity of leafmining taxa and latitudes of sampling sites. In general, both abundance and diversity of leafminers significantly decreased with latitude. However, we discovered pronounced variation in patterns of latitudinal changes among study years and leafminer taxa. Variation among study years was best explained by mean temperatures in July at the northern ends of our gradients. During cold years, abundance of leafminers significantly decreased with latitude, while during warm years the abundance was either independent of latitude or even increased towards the pole. In the northern boreal forests (66° to 69°N), herbivores demonstrated larger changes in densities in response to temperature variations than in the boreo‐nemoral forests (59° to 62°N). Our data suggest that climate warming will result in a stronger increase in herbivory at higher latitudes than at lower latitudes.     

Wastewater Irrigation Increases the Abundance of Potentially Harmful Gammaproteobacteria in Soils in Mezquital Valley,Mexico

Wastewater contains large amounts of pharmaceuticals, pathogens, and antimicrobial resistance determinants. Only a little is known about the dissemination of resistance determinants and changes in soil microbial communities affected by wastewater irrigation. Community DNAs from Mezquital Valley soils under irrigation with untreated wastewater for 0 to 100 years were analyzed by quantitative real-time PCR for the presence of sul genes, encoding resistance to sulfonamides. Amplicon sequencing of bacterial 16S rRNA genes from community DNAs from soils irrigated for 0, 8, 10, 85, and 100 years was performed and revealed a 14% increase of the relative abundance of Proteobacteria in rainy season soils and a 26.7% increase in dry season soils for soils irrigated for 100 years with wastewater. In particular, Gammaproteobacteria, including potential pathogens, such as Pseudomonas, Stenotrophomonas, and Acinetobacter spp., were found in wastewater-irrigated fields. 16S rRNA gene sequencing of 96 isolates from soils irrigated with wastewater for 100 years (48 from dry and 48 from rainy season soils) revealed that 46% were affiliated with the Gammaproteobacteria (mainly potentially pathogenic Stenotrophomonas strains) and 50% with the Bacilli, whereas all 96 isolates from rain-fed soils (48 from dry and 48 from rainy season soils) were affiliated with the Bacilli. Up to six types of antibiotic resistance were found in isolates from wastewater-irrigated soils; sulfamethoxazole resistance was the most abundant (33.3% of the isolates), followed by oxacillin resistance (21.9% of the isolates). In summary, we detected an increase of potentially harmful bacteria and a larger incidence of resistance determinants in wastewater-irrigated soils, which might result in health risks for farm workers and consumers of wastewater-irrigated crops.     

Canopy closure and amphibian diversity in forested wetlands

The crowns of trees and shrubs often overtop temporary wetlands in forested regions. By shading pond basins, canopy can dramatically change the conditions experienced by residents such as amphibians. In this study, we estimated the presence of 8 amphibian species across 17 temporary wetlands at the Yale–Myers Forest in northeastern Connecticut, USA. In addition, we quantified the light environment using a grid of hemispherical canopy photographs to calculate Global Site Factor (GSF) within each wetland. Amphibian richness was low in most wetlands, and most wetlands were relatively shaded. Amphibian richness increased in lighter wetlands. This result was not confounded by relationships with wetland size. Most amphibian species tended to be absent from heavily shaded wetlands (‘open canopy specialists’). However, three species were often found in the shadiest wetlands (‘canopy generalists’). Field transplant experiments using one canopy generalist and one open canopy specialist showed that development of the generalist was less affected by wetland light levels compared with performance of the specialist. These findings suggest that canopy may be an important determinant of amphibian diversity patterns across wetlands. Further, conservation strategies dependent on universally applied, inviolate shoreline vegetation buffers may inadvertently contribute to species loss. Because species differ in their sensitivity to changes in canopy, these losses may be predictable.     

Abundance and diversity of viruses in six Delaware soils

The importance of viruses in marine microbial ecology has been established over the past decade. Specifically, viruses influence bacterial abundance and community composition through lysis and alter bacterial genetic diversity through transduction and lysogenic conversion. By contrast, the abundance and distribution of viruses in soils are almost completely unknown. This study describes the abundance and diversity of autochthonous viruses in six Delaware soils: two agricultural soils, two coastal plain forest soils, and two piedmont forest soils. Viral abundance was measured using epifluorescence microscopy, while viral diversity was assessed from morphological data obtained through transmission electron microscopy. Extracted soil virus communities were dominated by bacteriophages that demonstrated a wide range of capsid diameters (20 nm to 160 nm) and morphologies, including filamentous forms and phages with elongated capsids. The reciprocal Simpson's index suggests that forest soils harbor more diverse assemblages of viruses, particularly in terms of morphological distribution. Repeated extractions of virus-like particles (VLPs) from soils indicated that the initial round of extraction removes approximately 70% of extractable viruses. Higher VLP abundances were observed in forest soils (1.31 x 10(9) to 4.17 x 10(9) g(-1) dry weight) than in agricultural soils (8.7 x 10(8) to 1.1 x 10(9) g(-1) dry weight). Soil VLP abundance was significantly correlated to moisture content (r = 0.988) but not to soil texture. Land use (agricultural or forested) was significantly correlated to both bacterial (r = 0.885) and viral (r = 0.812) abundances, as were soil organic matter and water content. Thus, land use is a significant factor influencing viral abundance and diversity in soils.     

Abundance and diversity of Archaea in heavy-metal-contaminated soils.

The impact of heavy-metal contamination on archaean communities was studied in soils amended with sewage sludge contaminated with heavy metals to varying extents. Fluorescent in situ hybridization showed a decrease in the percentage of Archaea from 1.3% +/- 0.3% of 4', 6-diamidino-2-phenylindole-stained cells in untreated soil to below the detection limit in soils amended with heavy metals. A comparison of the archaean communities of the different plots by denaturing gradient gel electrophoresis revealed differences in the structure of the archaean communities in soils with increasing heavy-metal contamination. Analysis of cloned 16S ribosomal DNA showed close similarities to a unique and globally distributed lineage of the kingdom Crenarchaeota that is phylogenetically distinct from currently characterized crenarchaeotal species.     

Reed cut,habitat diversity and productivity in wetlands

There is a conflict between nature conservation and thatching industry regarding the management of reedbeds. On one hand, reedbeds are of an economical importance by providing thatching material, on the other hand, they harbour several endangered species. Reedbeds are typically managed by winter cutting, but its impacts on biodiversity are poorly understood. Our aim was to study the effects of winter cutting on the habitat diversity and structural heterogeneity of wetlands in a lowland alkali landscape (East-Hungary). We tested the following hypotheses: (i) Both diversity of plant species and habitat diversity are lower in winter cut wetlands compared to unmanaged stands. (ii) The distribution of biomass (green biomass, litter and standing dead biomass) is more homogeneous in winter cut wetlands compared to unmanaged ones. We found that winter cutting decreased habitat diversity and structural heterogeneity at multiple scales. Number of plant species and all measures of habitat diversity (number of patches, vegetation types and the length of vegetation margins) had lower scores in cut wetlands than in unmanaged ones. We found that unmanaged wetlands harboured high amount of accumulated biomass and they also maintained high habitat diversity likely due to the heterogeneous distribution of the biomass. In unmanaged wetlands, biomass accumulation did not decrease habitat diversity and also contributed to a higher structural heterogeneity. In cut wetlands, expansion of reed was an important driver of the decrease in habitat diversity and structural heterogeneity. Reed expansion likely overrode fine-scale edaphic conditions (hydrology and salinity) in shaping vegetation patterns; thus we suggest to avoid intensive winter cutting.     

Abundance and diversity of planktonic rotifers in the Po River

Zooplankton samples from the middle reach of the Po River were collected daily from 27 July to 24 August 1988 from a station located near Viadana. Changes in the biocoenosis structure were analyzed in relation to variations in flow rate. Rotifers accounted for more than 99% of the total zooplankton (protozoans excluded) in every sample. The dominant species were Brachionus calyciflorus, Brachionus bennini, Brachionus budapestinensis and Epiphanes macrourus. Under scanty flow conditions, the taxocoenosis showed marked stability. An increase in flow rate acts as a disturbance factor leading to a significant decrease in both total density and dominance.     

Activity and diversity of methanotrophic bacteria at methane seeps in eastern Lake Constance sediments

The activity and community structure of aerobic methanotrophic communities were investigated at methane seeps (pockmarks) in the littoral and profundal zones of an oligotrophic freshwater lake (Lake Constance, Germany). Measurements of potential methane oxidation rates showed that sediments inside littoral pockmarks are hot spots of methane oxidation. Potential methane oxidation rates at littoral pockmark sites exceeded the rates of the surrounding sediment by 2 orders of magnitude. Terminal restriction fragment length polymorphism (T-RFLP) analysis of the pmoA gene revealed major differences in the methanotrophic community composition between littoral pockmarks and the surrounding sediments. Clone library analysis confirmed that one distinct Methylobacter-related group dominates the community at littoral pockmarks. In profundal sediments, the differences between pockmarks and surrounding sediments were found to be less pronounced.     

Diversity of terrestrial isopods in the northern Tunisian wetlands

To evaluate the influence of wetland types on the distribution of terrestrial isopods, species richness, relative abundance and diversity indices were studied in the supralittoral zone of 95 wetlands in the north‐western of Tunisian dorsal, belonging to six types: lagoon, hill reservoir, river, dam, lake and sebkha. We tested the following hypothesis: (i) is isopod diversity influenced by wetland types? (ii) is isopod diversity influenced by bioclimatic zones? and (iii) what are the environmental factors influencing isopod distribution? A total of 3255 individuals belonging to twenty species of terrestrial isopods were captured. Species richness differs significantly between wetland types. A highly significant positive relationship between species richness and both humidity and altitudinal gradient was described. The dendrogram of similarities showed a divergence of the lagoons compared to the remaining wetland types.     

Abundance and phenology of macrofungal fruiting bodies in central and northern Japan

To understand how ectomycorrhizal (ECM), wood-decomposing (WDC) and litter-decomposing (LDC) fungi differ in abundance and fruiting season, fruiting-body production was monitored by counting their number and/or measuring their biomass in deciduous broad-leaved and coniferous forests in Ishikawa (central Japan) and Hokkaido (northern Japan). ECM fungi were dominant in forests of both types in Ishikawa and a Larix kaempheri forest in Tomakomai (Hokkaido), whereas WDC fungi were dominant in a deciduous broad-leaved forest in Sapporo (Hokkaido). ECM and WDC fungi usually showed two abundance peaks in Kanazawa (Ishikawa), mid-summer and autumn for ECM fungi and spring or summer and autumn for WDC fungi, whereas LDC fungi usually showed one peak in autumn. In Tomakomai, the abundance peak appeared later in ECM fungi but earlier in LDC and WDC fungi in comparison with Kanazawa. The mode of resource acquisition is assumed as one of factors that affect the seasonal timing of fruiting-body production. On the other hand, highly positive correlations were often observed between precipitation in Jun or Aug and the fruiting-body production in summer and/or autumn in the survey in Kanazawa, suggesting that precipitation could affect the fruiting-body production a few months later.     

Abundance and diversity of microfungi in three coastal beaches of Mexico

The abundance and diversity of species of microfungi was investigated on the beaches of Delfines, Km 24 Veracruz-Alvarado Highway, and El Coco, located on the coasts of the Caribbean Sea, Gulf of Mexico, and the Pacific Ocean, respectively. On each beach a sample composed of sand, subtidal wood or washed-up detritus with moist sand was collected. The samples were analyzed by three different methods, resulting in a total of 1,160 occurrences that fluctuated between 340 and 441 occurrences/sample. The number of species/sample fluctuated between 20 and 32. A total of 52 species was found, of which 12 were marine, and 40 nomarine, of terrestrial origin, and of these 15 were ascomycetes, 34 were hyphomycetes, 2 were blastomycetes and one was a coelomycete. The abundance distribution showed few species with high or low values, with the greates proportion having intermediate values. In order to compare species diversity among the samples frequency curves were utilized, based on the number of species expected from samples taken at random; the results showed that the beach at El Coco was richest in species.     

Macrophyte species diversity in formerly cultivated wetlands in Uganda

The diversity of major macrophytes was assessed in cultivated areas in Bukasa and Kinawataka wetlands in Central Uganda. One thousand and seventy‐two plots of 1 × 1 m were established in 69 cultivated areas. Data were collected on species richness and abundance. Two‐way analysis of covariance (ANCOVA) showed how cropping regimes affected macrophyte species richness and abundance. There were 127 plant species belonging to 37 families in cultivated areas. Of the 127 species, 42 were macrophytes and of the 37 families, fourteen contained macrophyte species. Plant species diversity was higher in the short‐term cropping regime areas (11.3 species per 1 m²) than in the long‐term cropping regime areas (9.3 species per 1 m²). However, macrophyte species richness was similar in the short‐term (3.2 species per 1 m²) and the long‐term (3.3 species per 1 m²) cropping regimes. The dominant families were Poaceae, Asteraceae and Cyperaceae with more than ten species each. The higher plant species diversity in cultivated areas than in uncultivated was because of nonmacrophyte species, thus cropping regime does not influence macrophyte species diversity. Increase in diversity of nonmacrophyte species in short‐term cropping regime implies that the use of wetlands for agricultural crop growing may alter plant species composition and diversity during secondary succession.     

中国红树林湿地物种多样性及其形成

目前中国红树林湿地共记录了2854种生物,包括真菌136种、放线菌13种、细菌7种、小型藻类441种、大型藻类55种、维管束植物37种、浮游动物109种、底栖动物873种、游泳动物258种、昆虫434种、蜘蛛31种、两栖类13种、爬行类39种、鸟类421种和兽类28种。这些动物中有8种国家一级保护动物,75种二级保护动物。中国红树林湿地是中国濒危生物保存和发展的重要基地,并在跨国鸟类保护中起着重要作用。中国红树林湿地单位面积的物种丰度是海洋平均水平的1766倍。从初级生产物质基础、食物关系多样性、宏观尺度和微观尺度的空间异质性、生境利用的时序性等方面分析了中国红树林湿地物种多样性极其丰富的原因。     

Reduction of avian diversity in created versus natural and restored wetlands

Natural wetland ecosystems continue to suffer widespread destruction and degradation. Many recent studies argue that artificial or restored wetlands compensate for wetland loss and are valuable for waterbird conservation. However, detailed comparisons of the value of natural, artificial and restored wetlands are lacking. Our aim was to assess if the restoration or creation of wetlands can fully compensate for the loss of natural wetlands for waterbirds. We compared the waterbird communities in a set of 20 natural, restored and artificial wetlands, all of which are considered important for waterbirds and are located within the same protected area (Doñana Natural Space, south‐west Spain). We used different measures of diversity, including phylogenetic relatedness, and the proportion of threatened species at national, European and international levels. We found that artificial wetlands have consistently lower value than restored and natural wetlands, with little difference between the latter two. Natural wetlands are essential for conserving diversity across the tree of life and for threatened species, but restored wetlands can be of similar value and can assure maintenance of key ecological processes. Thus, when economic costs per unit area are similar, resources for wetland conservation are better invested in restoration projects than in wetland creation, and caution is required when suggesting that artificial wetlands compensate for the loss of natural wetlands.     

Abundance and diversity of Homoptera in the canopy of a tropical forest

Abstract. 1. A series of samples of Homoptera was obtained by fogging the canopy of Luehea seemannii trees in tropical forest in the Panama Canal Zone at three different times of the year.
2. The peak of abundance occurs around July (at least 11.8 individuals/m²), in the early wet season, at a time when most of the trees in the forest, including Luehea are producing new leaves.
3. Minimum abundance occurs in March (at least 3.5 individuals/m²), in the late dry season.
4. The samples obtained are some 35% richer in species per given number of individuals than light trap samples taken simultaneously in a similar forest some 6 km away from the present sampling site.
5. The data show that the effect of intensive light trapping on the populations of Homoptera in the forest is virtually negligible.
6. For a given sample size the tropical samples are many times richer in species than samples from temperate areas.