Assessment of an index of biological integrity (IBI) to quantify the quality of two tributaries of river Chenab,Sialkot, Pakistan

Nullah Aik and Nullah Palkhu, two tributaries of river Chenab, were investigated for the assessment of fish habitat degradation as indicator of stream health. Fish abundance data were collected from 18 sites from September 2004 to April 2006 to develop multimetric indices for fish assemblage integrity and to detect the intensity of habitat degradation. A total of 12 metrics were calculated on the basis of taxonomic richness, habitat preference, trophic guild, stress tolerance and origin of species to develop stepped and continuous index of biological integrity (IBI) criteria. Cluster analysis (CA) classified sites based on species composition into three groups, viz., reference, moderately impaired and impaired groups. Non-metric multidimensional scaling (NMDS) was applied to identify underlying ecological gradient to highlight the habitat degradation. NMDS segregated two sites as less impaired, five sites as moderately impaired and eleven sites as impaired groups. Axes 1 and 2 explained a total variation of 53.3%. First axis explained the level of habitat impairment, whereas axis 2 indicated species richness along longitudinal gradient of streams. Sites located upstream of Nullah Aik showed higher IBI scores which dropped to its lowest in downstream sites near Sialkot city. Lowest values of IBI of sites in close proximity of city indicated the role of anthropogenic activities in catchment areas. The results indicated that variability in water chemistry can be related as a function of stream sites impairments (i.e., unimpaired, moderately impaired, and severely impaired). Water quality parameters showed strong correlation with IBI scores. Significantly negative correlation of IBI scores with COD, TDS, turbidity, Fe, Cr, Zn and positive correlation with DO and pH was found. The results can be used for restoration and future management of small streams passing through urban areas of Pakistan. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users. Handling editor: J. A. Cambray     

Improving biological indicators to better assess the condition of streams

Biological indicators of stream condition are in use by water resource managers worldwide. The State of Maryland and many other organizations that use Indices of Biotic Integrity (IBIs) must determine when and how to refine their IBIs so that better stream condition information is provided. With completion of the second statewide round in 2004, the Maryland Biological Stream Survey (MBSS) had collected data from 2500 stream sites, more than doubling the number of sites that were available for the original IBI development. This larger dataset provided an opportunity for the MBSS to address the following shortcomings in the original IBIs: (1) substantial disturbance apparent in some reference sites, (2) fish IBIs could not be applied to very small streams, (3) natural variability within IBIs (based on regions) resulted in some stream types (e.g., coldwater and blackwater streams) receiving lower IBI scores and (4) one IBI was not able to discriminate degradation as desired (i.e., Coastal Plain fish IBI). Therefore, development of new fish and benthic macroinvertebrate IBIs was undertaken to achieve the goals of: (1) increased confidence that the reference conditions are minimally disturbed, (2) including more natural variation (such as stream size) across the geographic regions and stream types of Maryland and (3) increased sensitivity of IBIs by using more classes (strata) and different metric combinations. New fish IBIs were developed for four geographical and stream type strata: Coastal Plain, Eastern Piedmont, warmwater Highlands and coldwater Highlands streams; new benthic macroinvertebrate IBIs were developed for three geographical strata: Coastal Plain, Eastern Piedmont and Highlands streams. The addition of one new fish IBI and one new benthic macroinvertebrate IBI partitioned natural variability into more homogeneous strata. At the same time, smaller streams (i.e., those draining catchments <300 ac), which constituted a greater proportion of streams (25%) sampled in Round Two (2000–2004) than Round One (1995–1997), because of the finer map scale, were included in the reference conditions used to develop the new IBIs. The resulting new IBIs have high classification efficiencies of 83–96% and are well balanced between Type I and Type II errors. By scoring coldwater streams, smaller streams and to some extent blackwater streams higher, the new IBIs improve on the original IBIs. Overall, the new IBIs provide better assessments of stream condition to support sound management decisions, without requiring substantial changes by cooperating stream assessment programs.     

Macroinvertebrate community response to natural and forest harvest gradients in western Oregon headwater streams

1. To examine the effects of forest harvest practices on headwater stream macroinvertebrates, we compiled a 167 site database with macroinvertebrate, fish, physical habitat and catchment land cover data from the three forested ecoregions in western Oregon. For our analysis, headwater streams were defined by catchment areas <10 km² and perennial water during summer low flows. Almost all sites in the database were selected using a randomised survey design, constituting a representative sample of headwater streams in these ecoregions. 2. Macroinvertebrate taxonomic and functional feeding group composition were very similar among the three ecoregions in the study area (Coast Range, Cascades and Klamath Mountains). On average, 55% of the individuals at each site were in the orders Ephemeroptera, Plecoptera or Trichoptera. Dipteran taxa (mostly chironomids) accounted for another 34%. At almost all sites, non‐insects made up <10% of the macroinvertebrate assemblage. Almost half (49%) of the assemblages were collectors; remaining individuals were about evenly divided among scrapers, shredders and predators. 3. There were 189 different macroinvertebrate taxa at the 167 sites with richness at individual sites ranging from 7 to 71 taxa. Ordination by non‐metric multidimensional scaling revealed a strong association between % Ephemeroptera, especially Baetis, and site scores along the first axis. This axis was also strongly related to % coarse substratum and fast water habitat. The second axis was strongly related to % intolerant individuals, site slope and altitude. No strong relationships were evident between any ordination axis and either logging activity, presence/absence of fish, catchment size or ecoregion. 4. Based on macroinvertebrate index of biotic integrity (IBI) scores, 62% of the sites had no impairment, 31% of the sites had slight impairment and only 6% of the sites had moderate or severe impairment. IBI scores were not strongly related to forest harvest history. All four severely impaired sites and five of the seven sites with moderate impairment were lower altitude, shallower slope stream reaches located in the Coast Range with evidence of agricultural activity in their catchment or riparian zone. % sand + fine substratum was the environmental variable most strongly related to macroinvertebrate IBI.     

Range of variability of channel complexity in urban,restored and forested reference streams

Summary 1. Channel complexity is an important ecological property of stream systems and is often targeted for restoration in channelised urban streams. However, channel complexity is rarely defined explicitly, and little research on channel complexity has been conducted in streams in urban catchments that have not been directly channelised by human activities. Therefore, it remains unclear whether restoration of non‐channelised urban streams has improved complexity. 2. We explicitly define channel complexity and use a multimetric approach to provide a comprehensive assessment of complexity in multiple restored, urban and forested streams on the Maryland Coastal Plain and two streams of differing land use in Colorado. We also expand on the Maryland and Colorado results with a literature survey of channel complexity from diverse geographical regions. 3. Many streams draining urban catchments in Maryland had relatively high values of some complexity metrics compared to forested reference streams in Maryland and compared to the values for pristine streams calculated from the literature. This suggests that streams in urban catchments that are not directly manipulated by human activities (e.g. channelisation or piping) may be able to maintain channel structures beneficial for aquatic organisms even when impervious surfaces are the dominant form of land use in the catchment. 4. Restored streams in Maryland had equal or lower values of many complexity metrics compared to streams draining urban catchments in Maryland. This suggests that restoration of streams draining urban catchments did not improve the overall channel complexity. 5. Our results highlight the need to explicitly define and measure the attributes of channel complexity that are targeted during restoration, to determine whether the streams in urban catchments are truly degraded with respect to channel complexity. 6. Combined with recent synthesis work suggesting that biodiversity may not be improved by increasing the channel complexity, these results indicate that targeting catchment processes may prove a more useful approach to restoration than attempting to move channel complexity in streams draining urban catchments towards conditions in forested reference streams.     

Marine intrusion and freshwater discharge as opposite forces driving fish guilds distribution along coastal plain streams

This work investigated variations in fish guilds along marine surf zone to freshwater reaches of coastal plain streams and their relationships with environmental factors. Fish and abiotic data were collected monthly during 1 year and an automatic image-recording system was used to monitor marine intrusion events. Aside ephemeral salinity gradients produced by storm surges, freshwater conditions prevailed inside streams. Despite of that, fish habitat use guilds were spatially distributed according to their salinity tolerance, with marine species occurring mainly in the stream site near the adjacent surf zone and non-salinity tolerant freshwater fish in the upstream site. Marine intrusion was the main factor correlated with the entrance of marine-related fish into streams during summer. In contrast, higher rainfall during colder months prevented the dominance of marine species. This work highlighted that spatial segregation in fish habitat use guild could occur even in the absence of long-lasting salinity gradients, since active colonization by euryhaline fish and sporadic marine intrusions can lead to the occurrence of marine-related fish in coastal plain streams. Future studies should evaluate if this marine intrusion role on fish of coastal plain streams would be affected by changes in sea level and rainfall in a global warming scenario.     

Effects of land use on water quality and aquatic biota of three North Carolina Piedmont streams

Three streams in the Piedmont ecoregion of North Carolina were studied to evaluate the effect of land use (forested, agricultural, urban) on water quality and aquatic biota. In comparison with the forested stream, there were few changes in water quality at the agricultural and urban streams. Suspended-sediment yield was greatest for the urban catchment and least at the forested catchment. Suspended-sediment concentrations during storm events followed this same pattern, but at low-moderate flows suspended-sediment concentrations were greatest at the agricultural site. Most nutrient concentrations were highest at the agricultural site, and the amount of available dissolved nitrogen was elevated at both the urban and agricultural sites. High concentrations of metals (totals) in the water column were sometimes observed at all sites, but maximum average concentrations were recorded at the urban site (especially Cr, Cu, and Pb). Maximum sediment metal concentrations, however, were not found at the urban site, but were usually recorded at the forested site. Only minor differences were noted between fish communities of the forested and agricultural sites, although both abundance and average size of some species increased at the agricultural site. The fish community at the urban site was characterized by low species richness, low biomass, and the absence of intolerant species.Invertebrate taxa richness, a biotic index, and the number of unique invertebrate species (found at only one site) indicated moderate stress (Fair water quality) at the agricultural site and severe stress (Poor water quality) at the urban site. At the agricultural site, declines in taxa richness within intolerant groups were partially offset by increases within tolerant groups. The agricultural stream had the highest abundance values, indicating enrichment. The urban site, however, was characterized by low species richness for most groups and very low abundance values. Analysis of seasonal patterns suggested detritus was the most important food source for invertebrates in the forested stream, while periphyton was of greater importance in the agricultural stream. Dominant macroinvertebrate groups shifted from Ephemeroptera at the forested site, to Chironomidae at the agricultural site, and Oligochaeta at the urban site. There was little between-site overlap in dominant species (8–7%), indicating that land use strongly influenced the invertebrate community. Chemical and physical parameters measured at the three sites did not seem sufficient to account for all of the observed differences in the invertebrate communities, suggesting some unmeasured toxicity. Biological measurements, especially macroinvertebrates community structure, consistently indicated strong between-site differences in water and habitat quality.     

Anthropogenic disturbance and streams: land use and land‐use change affect stream ecosystems via multiple pathways

1. Ecosystems are strongly influenced by land use practices. However, identifying the mechanisms behind these influences is complicated by the many potential pathways (often indirect) between land use and ecosystems and by the long‐lasting effects of past land use. To support ecosystem restoration and conservation efforts, we need to better understand these indirect and lasting effects. 2. We constructed structural equation models (SEM) to evaluate the direct and indirect effects of contemporary (2002) land use (agriculture and development) and change in land use from 1952 to 2002 on present‐day streams (n = 190) in Maryland, U.S.A. Additional variables examined included site location, system size, altitude, per cent sand in soils, riparian condition, habitat quality, stream water NO₃‐N and benthic macroinvertebrate and fish measures of stream condition. Our first SEM (2002 Land Use) included the proportions of contemporary agriculture and development in catchments in the model. The second SEM (Land Use Change) included five measures of land use change (proportion agricultural in both times, developed in both times, agricultural in 1952 and developed in 2002, forested in 1952 and developed in 2002 and agricultural in 1952 and forested in 2002). 3. The data set fit both SEMs well. The 2002 Land Use model explained 71% of variation in NO₃‐N and 55%, 42% and 38% of variation in riffle quality, macroinvertebrate condition and fish condition, respectively. The Land Use Change model explained similar amounts of variation in NO₃‐N (R² = 0.72), riffle quality (R² = 0.57) and macroinvertebrate condition (R² = 0.44) but slightly more variation in fish condition (R² = 0.43). 4. Both models identified pathways through which landscape variables affect stream responses, including negative direct effects of latitude on macroinvertebrate and fish conditions and positive direct and indirect effects of altitude on NO₃‐N, riffle quality and macroinvertebrate and fish conditions. The 2002 Land Use model showed contemporary development and agriculture had positive total effects on NO₃‐N (both through direct pathways); contemporary development had negative effects on macroinvertebrate condition. The Land Use Change model showed that contemporary developed land that was forested in 1952 had no effects on NO₃‐N; current developed land that was developed or agricultural in 1952 showed positive effects on NO₃‐N. Forests that were agricultural in 1952 had negative effects on NO₃‐N, suggesting reduced NO₃‐N export with reforestation. The Land Use Change model also showed negative total effects of all types of contemporary developed land (developed, agricultural or forested in 1952) on benthic condition. Developed land that was forested in 1952 had negative effects on fish condition. Forest sites that were agricultural in 1952 had negative effects on fish and macroinvertebrate conditions, suggesting a long‐term imprint of abandoned agriculture in stream communities. 5. Our analyses (i) identified multiple indirect effects of contemporary land use on streams, (ii) showed that current land uses with different land use histories can exhibit different effects on streams and (iii) demonstrated an imprint of land use lasting >50 years. Knowledge of these indirect and long‐term effects of land use will help to conserve and restore streams.     

Impacts of land use at the catchment scale constrain the habitat benefits of stream riparian buffers

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Biogeography,ecoregions, and geomorphology affect fish species composition in streams of eastern Oklahoma,USA

Stream fish assemblages are structured by biogeographical, physical and biological factors acting on different spatial scales. We determined how physical factors, geomorphology and stream habitat, influenced fish species composition (presence–absence) in eastern Oklahoma, USA relative to the ecoregion and biogeographic effects previously reported. We sampled fish assemblages and surveyed geomorphology and habitat at 107 stream sites in the Boston Mountains, Ouachita Mountains, and Ozark Highlands ecoregions in eastern Oklahoma. Partial canonical correspondence analyses (pCCAs) and variance partitioning showed that patterns of endemism related to drainage basins and ecoregions explained important variation in fish species composition in all streams, but stream size and local channel morphology explained more variation overall. Stream size effects were most important in explaining variability in fish species composition in both northeastern and southeastern Oklahoma streams. Local channel morphology and substrate characteristics were secondarily important. Variables typically considered important as fish habitat (aquatic vegetation, etc.) had little effect on fish species composition.     

Comparative Environmental Assessment in the Studies of Benthic Diatom,Macroinvertebrate, and Fish Communities

Community response to environmental gradients operating at hierarchical scales was assessed in studies of benthic diatoms, macroinvertebrates and fish from 44 stream sites in the New York City watershed. Hierarchical cluster analysis (TWINSPAN) of diatoms and fish partitioned the study sites into four groups, i.e., acid streams, reservoir outlets and wetland streams, large eutrophic streams, and small eutrophic streams; macroinvertebrate TWINSPAN distinguished an additional group of silty eutrophic streams. The correspondence among the three assemblage TWINSPAN groupings was moderate, ranging from 51 to 57%. The similarity across the four major group types was the highest among large eutrophic stream and acid stream assemblages, and the lowest among small eutrophic stream assemblages. Stepwise discriminant function analysis revealed that environmental factors discriminated most effectively the diatom grouping and least effectively the fish grouping. The best environmental predictors for diatom and macroinvertebrate grouping were conductance and percent surface water, while population density was most powerful in separating the fish groups. Carbaryl was the only pesticide that correlated with macroinvertebrate grouping. Partial redundancy analyses suggested a differential dependence of freshwater communities on the scale of the environmental factors to which they respond. The role of small‐scale habitat and habitatland cover/land use interaction steadily increased across the diatom, macroinvertebrate, and fish assemblages, whereas the effect of large‐scale land cover/land use declined.     

Fish richness and species-habitat relationships in two coastal streams of French Guiana, South America

We examined the factors controlling fish species richness and taxa-habitat relationships in the Malmanoury and Karouabo coastal streams in French Guiana between the short and long rainy seasons. The aims were to evaluate the environmental factors that describe species richness on different scales and to define the ecological requirements of fish taxa in the two streams at that period of the year. We sampled ten regularly spaced freshwater sites in each stream with rotenone. We caught a total of 7725 individuals representing 52 taxa from 21 families and 6 orders. More taxa were caught in the Malmanoury (n=46) than in the Karouabo stream (n=37). These values augmented by the number of fish taxa caught only by gill nets in a parallel survey fitted very well to a log-log model of fish richness versus catchment area in Guianese rivers. Most of the fish taxa encountered in the Malmanoury and Karouabo streams were of freshwater origin and nearly all the fish species caught in these two small coastal streams were also found in the nearby Sinnamary River with the exceptions of the cichlid Heros severus and the characid Crenuchus spirulus. Moreover, no significant relationship was found between a size-independent estimate of fish richness and distance from the Ocean. Thus, despite their coastal position, the Malmanoury and Karouabo streams contained fish assemblages with strong continental affinities. At a local scale, independently of site size, those with relatively more habitat types harbored a relatively greater number of fish taxa. Canopy cover, water conductivity and bank length were the most important environmental variables for fish assemblage composition at that period of the year. Oxygen and vegetation participated also in defining fish habitat requirements but to a lesser extent. This revised version was published online in July 2006 with corrections to the Cover Date.     

Development of an Index of Biotic Integrity Based on Fish Communities to Assess the Effects of Rural and Urban Land Use on a Stream in Southeastern Brazil

A fish‐based Index of Biotic Integrity (IBI) was adapted for use in a stream of the heavily impacted Piracicaba River basin in southeastern Brazil. The influences of land use (mainly sugar‐cane crops) and an urban area on the fish community were investigated at ten sites along a 17 km‐long stream during the dry and rainy season. The IBI varied with the season and location along the stream, reflecting differences between the agricultural and urban sites, which were more pronounced during the dry season. The final index was positively correlated with a Habitat Quality Index (dry season) but not with a Water Quality Index. The results can be viewed as a tool for assessing and monitoring the ecological health of streams in this watershed. (© 2011 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Patterns of shield darter, <Emphasis Type="Italic">Percina peltata</Emphasis>, distribution in the Eastern Piedmont of Maryland,USA

Detailed analyses of habitat associations with rare species are typically constrained by limited sample size and the availability of habitat data. The dense spatial coverage of stream sampling by the Maryland Biological Stream Survey provides ample data to quantitatively examine correlations between habitat and rare species distributions. The shield darter, Percina peltata, has a widespread distribution on the Atlantic Slope of the United States, but is uncommon throughout its range in Maryland. Associations of in situ physical habitat, water chemistry, and alterations in landscape with shield darter presence in the Eastern Piedmont physiographic province in Maryland were examined. Shield darter occurrence was associated with larger sized streams in concordance with the species’ known ecology. Shield darter distribution was further associated with stream segments with deep riffle habitats with diverse velocities, low concentrations of chloride and sulfate, low levels of urbanization in upstream catchments, and several pollution intolerant fish species. Although the exact mechanism of the effects is not clear, results indicate that the shield darter is sensitive to urban development and habitat and water quality alteration that typically accompanies urbanization. Shield darter conservation in Maryland necessitates the protection and restoration of minimally urbanized watersheds where they are known to occur. The results from this study indicate that habitat information on rare species may be important in elucidating important habitat associations that are not evident via examination of community level data.     

Effects of reduced‐impact logging on physical habitat and fish assemblages in streams of Eastern Amazonia

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The Influence of Physical Habitat,Pyrethroids, and Metals on Benthic Community Condition in an Urban and Residential Stream in California

This study was designed to characterize benthic communities and physical habitat in both an urban (Kirker Creek) and residential (Pleasant Grove Creek) stream in California in late spring of 2006 and 2007. Concurrent water quality evaluations, physical sediment parameters, pyrethroids, bulk metals, and SEM/AVS ratios were also measured during both years of this study. The relationship of various benthic metrics to physical habitat metrics, pyrethroids, and metals was evaluated for each stream using stepwise multiple linear regressions with both years combined for each stream, as well as both years and both streams combined, to increase the statistical power for determining significant relationships. Physical habitat was determined to be poor in each stream during both years of sampling. More than 100 benthic taxa were reported annually for both streams based on 2006 and 2007 sampling. A significant result from the stepwise regression analysis combining data for 2 years across both streams is that when habitat metrics and to a lesser degree metals are considered in the statistical models pyrethroids do not display any significant relationships to the benthic metrics. In summary, it is apparent from this analysis that the health of benthic communities in both streams is primarily affected by habitat metrics.     

Re‐building brown trout populations in dredged boreal forest streams: in‐stream restoration combined with stocking of young trout

1. Rivers in boreal forested areas were often dredged to facilitate the transport of timber resulting in channels with simplified bed structure and flow fields and reduced habitat suitability for stream organisms, especially lotic fishes. Currently, many streams are being restored to improve their physical habitat, by replacing boulders and gravel and removing constraining embankments. The most compelling justification behind stream restoration of former floatways has been the enhancement of native fish populations, specifically salmonids. 2. We examined the success of a stream management programme aimed at re‐building diminished brown trout (Salmo trutta) populations by monitoring densities of young‐of‐year and older trout in 18 managed and three reference streams during 2000–2005. Rehabilitation included in‐stream restoration combined with a 5‐year post‐restoration period of stocking young brown trout. Our space‐for‐time substitution design comprised four pre‐management, four under‐management, 10 post‐management and three reference streams. 3. Densities of young‐of‐year brown trout, indicating population establishment, were significantly higher in post‐ compared with pre‐management streams. However, density of young‐of‐year brown trout in post‐management streams was significantly lower compared with near‐pristine reference streams. Furthermore, success of managed brown trout population re‐building varied, indicating stream‐specific responses to management measures. Density of burbot (Lota lota), a native generalist predator, was associated with low recruitment of brown trout. 4. Stream‐specific responses imply that rehabilitation of brown trout populations cannot be precisely predicted thereby limiting application. Our findings support the importance of adaptive stream restoration and management, with focus on identifying factor(s) limiting the establishment of target fish populations.     

Relating fish biomass to habitat and chemistry in headwater streams of the northeastern United States

Stream pH and stream habitat have both been identified as important environmental features influencing total fish biomass in streams, but few studies have evaluated the relative influence of habitat and pH together. We measured total fish biomass, stream habitat, and stream pH in sixteen sites from three tributary systems in the northeastern United States. The habitat metrics included total pool area, a cover score, large wood frequency, and stream temperature. We created and compared nine linear models relating total fish biomass in summer to stream pH and stream habitat using Akaike’s Information Criterion (AIC) analysis. The best (most parsimonious) models included pool area and stream pH. These results and a separate comparison of three regressions (low-flow pH, pool area, and these two metrics together versus total fish biomass) suggest that both habitat and stream buffering capacity affect the total biomass of fish in northeastern US headwater streams. When stream pH is adequate (low-flow pH greater than at least 5.7), physical habitat is likely to be more important, but under lower pH conditions, habitat is likely to be less effective in accounting for the total biomass of fish in these streams. This work demonstrates the continued effects of stream acidification in the northeastern US and more generally, it illustrates the importance of considering both physical and chemical conditions of a stream when evaluating the factors influencing fish communities.     

Effects of Landscape and Riparian Condition on a Fish Index of Biotic Integrity in a Large Southeastern Brazil River

Environmental conditions of a large river in southeastern Brazil were assessed by evaluating fish assemblage structure (index of biotic integrity, IBI), landscape use (forest, pasture, urban area, and tributary water) and riparian condition. A survey of the 338 km-long middle reach of the Rio Paraiba do Sul, containing a large urban-industrial complex, was conducted in two seasons: summer/wet and winter/dry. Fish were sampled with a standardized level of effort twice at seven sites, between March 2001 and April 2002, by gill nets, cast nets, sieves and seines. Riparian condition was evaluated by direct observations, and land use maps were used to assess landscape condition of an 8 km² buffer surrounding each site. IBI scores ranged from 5 to 36 (out of a possible range of 4–40), with lowest values at an urban-industrial landscape, and highest scores upstream and downstream, indicating the river’s recovery capacity. The most appropriate time to assess IBI was during the winter/dry period, when sampling was more effective and the IBI was more sensitive to changes in environmental quality. Landscape use and riparian condition were correlated, and IBI was positively correlated with % pasture, % tributary area, and riparian condition, but negatively correlated with % urban area. In some cases urban areas eliminated riparian woody vegetation, destabilizing site physical habitat structure.