An Analysis of Variance of Nominal Data

This paper considers a common problem in analysis of variance where the responses to a set of treatments are nominal (i.e. are recorded in frequencies) with no underlying metric. Reasoning by analogy from standard analysis of variance of a two-way classification we develop chi-square tests for significance of treatments and interactions. Two tests are proposed for interaction and their asymptotic properties are studied.     

Group-theory classification of oscillations of plasma clusters

Normal oscillations of three-dimensional configurations of dust grains trapped in a spherically symmetric potential well are studied. All possible oscillations of a system consisting of 7–13 grains are classified in terms of group theory. For a Coulomb interaction potential, all the oscillation frequencies are calculated. The frequencies and polarizations of some oscillation modes are obtained for an arbitrary interaction potential.     

Measurement of surface area of stones

The surface area of stones can be quickly, accurately, and precisely estimated from linear regression equations of area on a two-dimensional term of the form (xy + yz + zx) where x, y, and z are either the axial dimensions or the axial perimeters of stones. Dimension measurements are made with calipers, and perimeters are measured with a tape measure or a mapping wheel. The best fit slopes for the equations are determined from a representative sample of stones whose surface areas are measured by mapping. Estimates of surface areas of river-worn cobbles by these methods had mean percentage absolute errors of about 4%, considerably better than other methods examined.     

Characterization of scientific studies usually cited as evidence of adverse effects of GM food/feed

GM crops are the most studied crops in history. Approximately 5% of the safety studies on them show adverse effects that are a cause for concern and tend to be featured in media reports. Although these reports are based on just a handful of GM events, they are used to cast doubt on all GM crops. Furthermore, they tend to come from just a few laboratories and are published in less important journals. Importantly, a close examination of these reports invariably shows methodological flaws that invalidate any conclusions of adverse effects. Twenty years after commercial cultivation of GM crops began, a bona fide report of an adverse health effect due to a commercialized modification in a crop has yet to be reported.     

Structure of the cross-striated adductor muscle of the scallop

The structure of the cross-striated adductor muscle of the scallop has been studied by electron microscopy and X-ray diffraction using living relaxed, glycerol-extracted (rigor), fixed and dried muscles. The thick filaments are arranged in a hexagonal lattice whose size varies with sarcomere length so as to maintain a constant lattice volume. In the overlap region there are approximately 12 thin filaments about each thick filament and these are arranged in a partially disordered lattice similar to that found in other invertebrate muscles, giving a thin-to-thick filament ratio in this region of 6:1.The thin filaments, which contain actin and tropomyosin, are about 1 μm long and the actin subunits are arranged on a helix of pitch 2 × 38.5 nm. The thick filaments, which contain myosin and paramyosin, are about 1.76 μm long and have a backbone diameter of about 21 nm. We propose that these filaments have a core of paramyosin about 6 nm in diameter, around which the myosin molecules pack. In living relaxed muscle, the projecting myosin heads are symmetrically arranged. The data are consistent with a six-stranded helix, each strand having a pitch of 290 nm. The projections along the strands each correspond to the heads of one or two myosin molecules and occur at alternating intervals of 13 and 16 nm. In rigor muscle these projections move away from the backbone and attach to the thin filaments.In both living and dried muscle, alternate planes of thick filaments are staggered longitudinally relative to each other by about 7.2 nm. This gives rise to a body-centred orthorhombic lattice with a unit cell twice the volume of the basic filament lattice.     

Hydration of krypton and consideration of clathrate models of hydrophobic effects from the perspective of quasi-chemical theory

Ab initio molecular dynamics (AIMD) results on a krypton-water liquid solution are presented and compared to recent XAFS results for the radial hydration structure for a Kr atom in liquid water solution. Though these AIMD calculations have important limitations of scale, the comparisons with the liquid solution results are satisfactory and significantly different from the radial distributions extracted from the data on the solid Kr/H(2)O clathrate hydrate phase. The calculations also produce the coordination number distribution that can be examined for metastable coordination structures suggesting possibilities for clathrate-like organization; none are seen in these results. Clathrate pictures of hydrophobic hydration are discussed, as is the quasi-chemical theory that should provide a basis for clathrate pictures. Outer shell contributions are discussed and estimated; they are positive and larger than the positive experimental hydration free energy of Kr(aq), implying that inner shell contributions must be negative and of comparable size. Clathrate-like inner shell hydration structures on a Kr atom solute are obtained for some, but not all, of the coordination number cases observed in the simulation. The structures found have a delicate stability. Inner shell coordination structures extracted from the simulation of the liquid, and then subjected to quantum chemical optimization, always decomposed. Interactions with the outer shell material are decisive in stabilizing coordination structures observed in liquid solution and in clathrate phases. The primitive quasi-chemical estimate that uses a dielectric model for the influence of the outer shell material on the inner shell equilibria gives a contribution to hydration free energy that is positive and larger than the experimental hydration free energy. The 'what are we to tell students' question about hydrophobic hydration, often answered with structural clathrate pictures, is then considered; we propose an alternative answer that is consistent with successful molecular theories of hydrophobic effects and based upon distinctive observable properties of liquid water. Considerations of parsimony, for instance Ockham's razor, then suggest that additional structural hypotheses in response to 'what are we to tell students' are not required at this stage.     

Mutants of Escherichia Coli with Increased Fidelity of DNA Replication

SINEs are short interspersed repeated DNA elements which are considered to spread throughout genomes via RNA intermediates. Polymorphisms with regard to the presence or absence of SINE are occasionally observed in a specific location of a genome. We modeled the evolution of SINEs with regard to this type of polymorphism. Because SINEs are rarely deleted, multiplication of elements is confined to a certain period, and a few master copies are considered to be responsible for their multiplication, the usual population genetic models of transposable elements assuming the equilibrium state are not applicable to describe the evolution of SINEs. Taking into account these properties and assuming selective neutrality, we computed conditional probabilities of finding a SINE at a specific site given that this site is first found because it is occupied by a SINE in an original sample. Using these probabilities, we investigated ways to estimate the multiplication period and infer relationships among populations. The latter inference procedures are shown to be strongly dependent on the multiplication period.     

An investigation of the sources of nonuniqueness in deterministic identifiability

While a choice of techniques exists for checking the deterministic (structural) identifiability of a specific linear, time-invariant model from a specific experiment, and some progress has been made towards topological criteria for identifiability, no method at present available allows quick and reliable checking of a range of models for globally unique identifiability from a range of experiments. Even individual cases are sometimes difficult and tedious to check. The reasons are examined by exhaustive case-by-case analysis of single-input experiments on all possible three-compartment models. All patterns of loss to the environment are covered, and all combinations of observed compartments. Catalogues of minimal observation sets for globally unique identifiability, and of nonuniquely identifiable cases, are presented. The structural causes of nonuniqueness are discussed by reference to examples from the latter catalogue. Methods are given for shortening the derivation of the structural equations giving rise to nonunique parameters. From the diversity of behavior found, it is concluded that the prospects of obtaining a comprehensive set of necessary and sufficient structural conditions for globally unique identifiability are poor.     

Possible evidence of predation in placoderms (Pisces) of the Evlanovo basin of central Russia

Two placoderms of different orders from a concretion of the Zyabrevo locality (Evlanovo Regional Stage, Frasnian) in central Russia are described. Five plates of the ventral and lateral sides of the trunk armor are assigned to a plourdosteid arthrodire. Three bones located in the region of its stomach are determined as a juvenile ptyctodontid, Ctenurella sp. Records providing actual evidence of predation in Devonian vertebrates are extremely scarce. Finds of this kind are listed for the first time.     

河南大学校园鸟类初步调查

截至2010年12月,为期2年的河南大学校园鸟类调查共记录到鸟类44种,隶属11目、25科;其中雀形目鸟类28种,留鸟20种,夏候鸟18种,冬候鸟和旅鸟各3种,分别占总数的63.6%、45.5%、40.9%、6.8%和6.8%;区系分析表明东洋种9种,古北种16种,广布种19种,分别占总数的20.5%、36.4%和43.2%。整体表现出南北混杂,古北种鸟类较东洋种比例大,广布种鸟类较多的特点。在调查基础上,提出了一些校园鸟类保护的建议。     

Ultrastructural and biochemical studies of the swelling of developing chick telencephalic slices

Summary An ultrastructural and biochemical study of the importance and localization of tissue swelling was performed on telencephalic slices of 1- and 30-day-old chicks incubated in an oxygenated or a non-oxygenated physiological medium. The swelling of slices is greater for 30-day-old chick material than for that from 1-day-old chicks. It also reaches higher values in the non-oxygenated than in the oxygenated medium. When the 30-day-old chick telencephalic slices are incubated in an oxygenated medium, swelling mainly affects astrocytes, and especially the astrocytic endfeet. When they are incubated in a non-oxygenated medium, the astrocytes and astrocytic endfeet are very swollen and in addition the swelling also affects the neurons and their organelles. Extracellular space is increased. When 1-day-old chick telencephalic slices are incubated in a non-oxygenated medium, the tissue structures are well preserved. Swelling predominantly affects astrocytes and astrocytic endfeet. Neurons are not affected and the extracellular space is reduced. However, when they are incubated in an oxygenated medium, tissue structures are greatly affected showing a high degree of disorganization. Extracellular space is greatly increased. This study thus indicates that the best incubation conditions are an oxygenated medium for 30-day-old chick telencephalic slices which are characterized by an aerobic metabolism, and a non-oxygenated medium for 1-day-old chick telencephalic slices which have a predominantly anaerobic metabolism.     

The behavior of rings of coupled oscillators

Coupled oscillators in a ring are studied using perturbation and numerical methods. Stability of waves with nearest neighbor weak coupling is shown for a class of simple oscillators. Linkens' [23] model for colorectal activity is analyzed and several stable modes are found. Stability of waves with general (non nearest neighbor coupling) is determined and comparisons to the nearest neighbor case are made. Approximate solutions to a ring with inhomogeneities are compared with numerical simulations.Supported by a NSF Grant No. MCS8300885 and the Alfred Sloan Foundation     

Comparison of floristic and structural classification of vegetation

A comparison is made between floristic and structural-physiognomic classifications of a tropical dry, semi-evergreen forest and thicket vegetation of south-eastern India. The classifications are strikingly similar in their main groupings which are ecologically meaningful; the differences between the classifications are virtually limited to allocation of some stands to different subcommunities. It is concluded that the use of structural-physiognomic criteria allows a detailed and ecologically significant classification of vegetation. Fairly advanced calculation facilities are necessary, however, to reach such a classification, since the structural-physiognomic differences between the resulting groupings are largely of a quantitative and not of a qualitative nature. This is a consequence of the general occurrence in all stands of the vegetation of the very great majority of the characters used in this study.Nomenclature follows Sprangers & Balasubramanian (1978) who give a complete list of authorities.     

Structure and mode of formation of the nucleolus in meristematic cells of Vicia faba and Allium cepa

Interphase nucleoli from Vicia faba and Allium cepa meristematic cells are roughly classified into two categories: (a) those that commonly show a rather homogeneous texture (except for small light spaces of various sizes) and frequently contain dense particles 140 A in diameter; (b) those found more frequently in Vicia characterized by a very sharp boundary between a dense outer cortex and a much lighter central core. The dense particles are not found in such nucleoli. In Allium the boundary is more irregular and dense particles are sometimes observed in the outer layer. Many nucleoli show a structure intermediate between these two types. They are characterized by a gradient of increasing density from the center to the periphery and occasionally contain dense 140 A granules. During interphase, certain nucleoli are closely associated with segments of chromatin strands which undoubtedly represent nucleolar organizing regions. The dense 140 A granules are followed during the mitotic cycle. In Allium, they are first seen in loose clusters between arms of late anaphase chromosomes where they become more concentrated in early telophase. The substance within which they are scattered slowly increases in density during that time until finally, the particles are limited to small bodies of distinctive character. Evidence is presented suggesting that these small prenucleolar bodies fuse during telophase to give rise to the mature interphase nucleoli. Similar events are described in Vicia material except that a coating of dense substance appears around telophase chromosomes before the formation of prenucleolar bodies.     

The use of cultured hepatocytes to investigate the metabolism of drugs and mechanisms of drug hepatotoxicity

Hepatotoxins can be classified as intrinsic when they exert their effects on all individuals in a dose-dependent manner, and as idiosyncratic when their effects are the consequence of an abnormal metabolism of the drug by susceptible individuals (metabolic idiosyncrasy) or of an immune-mediated injury to hepatocytes (allergic hepatitis). Some xenobiotics are electrophilic, and others are biotransformed by the liver into highly reactive metabolites that are usually more toxic than the parent compound. This activation process is the key to many hepatotoxic phenomena. Mitochondria are a frequent target of hepatotoxic drugs, and the alteration of their function has immediate effects on the energy balance of cells (depletion of ATP). Lipid peroxidation, oxidative stress, alteration of Ca(2+) homeostasis, and covalent binding to cell macromolecules are the molecular mechanisms that are frequently involved in the toxicity of xenobiotics. Against these potential hazards, cells have their own defence mechanisms (for example, glutathione, DNA repair, suicide inactivation). Ultimately, toxicity is the balance between bioactivation and detoxification, which determines whether a reactive metabolite elicits a toxic effect. The ultimate goal of in vitro experiments is to generate the type of scientific information needed to identify compounds that are potentially toxic to man. For this purpose, both the design of the experiments and the interpretation of the results are critical.]     

Tensor products of digraphs and the structure of groups of pairs

The tensor product of two digraphs turns out to be a digraph with certain special properties. Several theorems presenting some of these properties are proved, and a characterization of tensor products having a prime number of lines is obtained. Applications are presented in which tensor products are used as structural models of groups of pairs of individuals formed from two original groups of singles.     

Demonstration of rotational symmetries in alpha-keratin microfibrils of porcupine quill tip

Selected electron micrographs of transversely, obliquely and longitudinally sectioned microfibrils of transversely sectioned porcupine quill tip are shown to possess 2-fold radial, 3-fold radial and 5-fold polygonal rotational symmetries. These symmetries are verified with a rotation technique, and are similar to edge, corner and face projections of a pentagonal dodecahedron. The a-keratin microfibril is therefore suggested to be composed of a linear arrangement of morphologically identical microfibrillar subunits which approximate the shape of a pentagonal dodecahedron. The various line patterns present in electron micrographs of microfibrils are explained by different orientations of this three-dimensional shape within the thickness of the section. Previous electron microscopic models for the structure of the microfibrils are incompatible with these results. The image averaging methods used to arrive at these earlier models are discussed, and are thought to yield results which must differ from the demonstrated rotational symmetries.     

蜻蜓目高级阶元系统发育关系研究进展

综述了对蜻蜓目系统发育的研究。对一些规模较大较全面的研究结果做了描述,并对其进行比较;对最近的基于分子的和基于形态的研究的共同点做了总结,其共同支持的观点包括:束翅亚目处于分支的基部为一并系类群,差翅亚目与间翅亚目关系较近。     

Energy of electrons emitted as a result of separation of surfaces

Experiments indicating acceleration of charged particles as a result of separation of solid surfaces are analyzed. As a possible mechanism of such acceleration, generation of surface charge on the separated surfaces of a cleaved ionic crystal is considered. The maximum electric field generated due to the charging of the separated surfaces and the energy of electrons accelerated in such a field are estimated. It is shown that, for the maximum attainable electric field, conditions are created for the generation of runaway electrons that, even at atmospheric pressure, electrons are accelerated to high energies, not experiencing collisions with gas particles.     

Anabolic steroids: a review of their effects on the muscles, of their possible mechanisms of action and of their use in athletics.

Anabolic steroids are synthetic molecules developed in the hope of obtaining a complete separation of the androgenic and myotrophic (anabolic) actions of testosterone. Such a goal has never been fully achieved. However, some synthetic steroids present a partial dissociation between these two activities. Since a single hormonal receptor apparently mediates the androgenic as well as the anabolic actions of testosterone, differences in patterns of androgen metabolization in the muscles and the sex accessory organs have been proposed as a possible cause of this phenomenon. Undoubtedly, androgens are able to exert a trophic effect on skeletal and cardiac muscle fibres in subjects with low circulating levels of testosterone such as prepubertal or hypogonadal males and females; however, the widespread use of anabolic steroids in male athletes to increase their physical performances poses the question of whether these compounds are active in the presence of normal circulating levels of testosterone. Most experimental animal studies indicate that anabolic steroids are ineffective in this situation. Since the results of the experiments performed in humans are largely contradictory, it is still not clear whether anabolic steroids are able to improve athletic performances. These and other relevant issues are reviewed.