The Inter-Valley Soil Comparative Survey: the ecology of Dry Valley edaphic microbial communities

Recent applications of molecular genetics to edaphic microbial communities of the McMurdo Dry Valleys and elsewhere have rejected a long-held belief that Antarctic soils contain extremely limited microbial diversity. The Inter-Valley Soil Comparative Survey aims to elucidate the factors shaping these unique microbial communities and their biogeography by integrating molecular genetic approaches with biogeochemical analyses. Although the microbial communities of Dry Valley soils may be complex, there is little doubt that the ecosystem''s food web is relatively simple, and evidence suggests that physicochemical conditions may have the dominant role in shaping microbial communities. To examine this hypothesis, bacterial communities from representative soil samples collected in four geographically disparate Dry Valleys were analyzed using molecular genetic tools, including pyrosequencing of 16S rRNA gene PCR amplicons. Results show that the four communities are structurally and phylogenetically distinct, and possess significantly different levels of diversity. Strikingly, only 2 of 214 phylotypes were found in all four valleys, challenging a widespread assumption that the microbiota of the Dry Valleys is composed of a few cosmopolitan species. Analysis of soil geochemical properties indicated that salt content, alongside altitude and Cu²⁺, was significantly correlated with differences in microbial communities. Our results indicate that the microbial ecology of Dry Valley soils is highly localized and that physicochemical factors potentially have major roles in shaping the microbiology of ice-free areas of Antarctica. These findings hint at links between Dry Valley glacial geomorphology and microbial ecology, and raise previously unrecognized issues related to environmental management of this unique ecosystem.     

Global change tipping points: above- and below-ground biotic interactions in a low diversity ecosystem

Low diversity ecosystems are expected to be more vulnerable to global changes although they have received less attention than high diversity ecosystems. Addressing the present state of the Antarctic Dry Valley region by focusing on the potential global changes that may alter the coupling of above- and below-ground species and ecosystem processes is a realistic and critical need that has value beyond the Antarctic community. Presented here are suggested implications of global change on the Dry Valley terrestrial systems and how these effects might be manifested in the future.     

Ultrastructural and genetic characteristics of endolithic cyanobacterial biofilms colonizing Antarctic granite rocks

The precise identification of the cyanobacteria that comprise an endolithic biofilm is hindered by difficulties in culturing the organisms found in these biofilms and a lack of previous molecular and ultrastructural data. This study characterizes, both at the ultrastructural and molecular level, two different cyanobacterial biofilms found in fissures of granite from continental Antarctica. Electron microscopy revealed structural differences between the two biofilms. One was only loosely adhered to the substrate, while the other biofilm showed a closer association between cells and rock minerals and was tightly attached to the substrate. Cells from both biofilms where ultrastructurally distinct, displaying, for instance, clear differences in their sheaths. The amounts of EPS and their organization associated with the cyanobacteria may determine the differences in adhesion and effects on the lithic substrate observed in the biofilms. By sequencing part of the 16S rRNA gene, the two cyanobacteria were also genetically characterized. The gene sequence of the cells comprising the biofilm that was tightly attached to the lithic substrate showed most homology with that of an endolithic cyanobacterium from Switzerland (AY153458), and the cyanobacterial type loosely adhered to the rock, clustered with Acaryochloris marina, the only organism unequivocally known to contain chlorophyll d. This study reveals the presence of at least two different types of endolithic biofilm, dominated each by a single type of cyanobacterium, able to withstand the harsh conditions of the Antarctic climate.     

Bathymetric distribution of fossil foraminifera within marine sediment cores from the eastern part of Lützow-Holm Bay, East Antarctica, and its paleoceanographic implications

Faunal analysis of fossil foraminifera from marine gravity and piston cores collected by the Japanese Antarctic Research Expeditions (1981 and 1992) is used to estimate the impact of the latest Quaternary paleoceanography on coastal environments of the eastern part of Lützow-Holm Bay, East Antarctica.Accelerator Mass Spectrometry (AMS) carbon-14 ages produced from sedimentary organic carbon were less than 16 ka (non-corrected). Detailed correlation among submarine cores and Holocene elevated marine deposits exposed on the eastern shore of the embayment is difficult due to the indefinite reservoir correction value for marine organic matter and to upward-increasing abnormal ages for some cores.A local carbonate dissolution level can be delineated around the present depth of 300–400 m or shallower in the eastern part of Lützow-Holm Bay during the Holocene, based on distributional trends of arenaceous, calcareous benthic, and planktonic foraminifera recognized within a depth less than 600 m. Downcore recovery of calcareous foraminifera containing Bulimina aculeata from two cores obtained in a drowned glacial trough deeper than 600 m situated far beyond the dissolution depth of CaCO₃ indicates the incursion of warm, high-nutrient, and CaCO₃-saturated Circumpolar Deep Water (CDW) from the offshore area along the trough toward the southeastern coast of Lützow-Holm Bay during the Holocene. The intrusion of CDW impacted on the marine environments of the southeastern coast, thereby contributing to peripheral retreat of the ice sheet as well as increasing calcareous benthic foraminiferal productivity along the southeastern coast of Lützow-Holm Bay.     

Microbiota within the perennial ice cover of Lake Vida, Antarctica

Lake Vida, located in the McMurdo Dry Valleys, Antarctica, is an 'ice-sealed' lake with approximately 19 m of ice covering a highly saline water column (approximately 245 ppt). The lower portions of the ice cover and the lake beneath have been isolated from the atmosphere and land for circa 2800 years. Analysis of microbial assemblages within the perennial ice cover of the lake revealed a diverse array of bacteria and eukarya. Bacterial and eukaryal denaturing gradient gel electrophoresis phylotype profile similarities were low (<59%) between all of the depths compared (five depths spanning 11 m of the ice cover), with the greatest differences occurring between surface and deep ice. The majority of bacterial 16S rRNA gene sequences in the surface ice were related to Actinobacteria (42%) while Gammaproteobacteria (52%) dominated the deep ice community. Comparisons of assemblage composition suggest differences in ice habitability and organismal origin in the upper and lower portions of ice cover. Specifically, the upper ice cover microbiota likely reflect the modern day transport and colonization of biota from the terrestrial landscape, whereas assemblages in the deeper ice are more likely to be persistent remnant biota that originated from the ancient liquid water column of the lake that froze.     

Decline in a dominant invertebrate species contributes to altered carbon cycling in a low-diversity soil ecosystem

Low-diversity ecosystems cover large portions of the Earth's land surface, yet studies of climate change on ecosystem functioning typically focus on temperate ecosystems, where diversity is high and the effects of individual species on ecosystem functioning are difficult to determine. We show that a climate-induced decline of an invertebrate species in a low-diversity ecosystem could contribute to significant changes in carbon (C) cycling. Recent climate variability in the McMurdo Dry Valleys of Antarctica is associated with changes in hydrology, biological productivity, and community composition of terrestrial and aquatic ecosystems. One of the greatest changes documented in the dry valleys is a 65% decrease in the abundance of the dominant soil invertebrate ( Scottnema lindsayae , Nematoda) between 1993 and 2005, illustrating sensitivity of biota in this ecosystem to small changes in temperature. Globally, such declines are expected to have significant influences over ecosystem processes such as C cycling. To determine the implications of this climate-induced decline in nematode abundance on soil C cycling we followed the fate of a ¹³C tracer added to soils in Taylor Valley, Antarctica. Carbon assimilation by the dry valley nematode community contributed significantly to soil C cycling (2–7% of the heterotrophic C flux). Thus, the influence of a climate-induced decline in abundance of a dominant species may have a significant effect on ecosystem functioning in a low-diversity ecosystem.     

Invertebrate Biodiversity in Antarctic Dry Valley Soils and Sediments

We studied invertebrate communities across a transition zone between soils and stream sediments in the cold desert landscape of Taylor Valley, Antarctica. We hypothesized that hydrological and biogeochemical linkages in the functionally important transition zone between streams and surrounding soils should be important in structuring invertebrate communities. We compared invertebrate communities along transects beginning in the saturated sediments under flowing stream water and extending laterally through the hyporheic zone to the dry soils that characterize most of the dry valley landscape. Nematodes, rotifers, and tardigrades assembled into different communities in soils and sediments, but there was no relationship between the total abundance of invertebrates and moisture. Community diversity was, however, influenced by the moisture and salinity gradients created with distance from flowing waters. The wet, low-salinity sediments in the center of the stream contained the most invertebrates and had the highest taxonomic diversity. Adjacent to the stream, communities in the hyporheic zone were influenced strongly by salt deposition. Abundance of invertebrates was low in the hyporheic zone, but this area contained the most co-occurring nematode species (three species). In dry soils, communities were composed almost entirely of a single species of nematode, Scottnema lindsayae, an organism not found in the stream center. These results suggest spatially-partitioned niches for invertebrates in soils and sediments in the dry valley landscape based on proximity to sources of moisture and the interactive effects of salinity. Received 22 September 1998; accepted 16 April 1999.     

Field and Microcosm Studies of Decomposition and Soil Biota in a Cold Desert Soil

In the extreme cold desert soil of the McMurdo Dry Valleys of Antarctica, we studied the effects of changing moisture and temperature on rates of decomposition and the activity and abundance of soil organisms. Our objective was to understand how moisture and temperature structure invertebrate communities and control important ecosystem processes and soil biotic activity in this extreme environment. First, in a field experiment, we manipulated soil moisture and temperature and compared cotton strip decomposition rates at two dry valley sites with different moisture regimes. At both sites, live nematode abundance and activity were unchanged by soil treatments over the 2-year study. In the same plots, the cotton strips did not decompose, despite soil warming and the addition of moisture. The results suggest that biological activity in the McMurdo Dry Valleys is severely limited and that soil organisms are not responsive to improving environmental conditions. Second, in microcosms, we manipulated dry valley soil moisture at a constant temperature of 10°C and measured the rates of key soil processes. Soil respiration, nitrification, and the decomposition of cotton strips were all greater in dry valley soils that were wetted to 10% moisture content, as compared to soils at 0.6%. These results indicate that the decomposition potential for dry valley soils is high when moisture and temperature limitations are removed. In the field, however, this process was extremely slow, and biota did not respond to improving environmental conditions. Soil processes appear to be limited primarily by the extreme desiccation of the dry valleys. Ecosystems processes are likely restricted to the brief periods following infrequent snowfall, melt, and soil wetting that permit the activity of soil microbes and biota. Received 23 May 2001; Accepted 7 September 2001.     

Microcystins,BMAA and BMAA isomers in 100-year-old Antarctic cyanobacterial mats collected during Captain R.F. Scott’s Discovery Expedition

Microcystins (MCN), β-N-methylamino-L-alanine (BMAA) and anatoxin-a were investigated in Antarctic cyanobacterial mats collected from Ross Island and the McMurdo Ice Shelf, East Antarctica during Captain Scott’s ‘Discovery’ National Antarctic Expedition (1901–1904). Ultra-performance liquid chromatography-photodiode array detection (UPLC-PDA) and tandem mass spectrometry (MS/MS) analysis were used to quantify the cyanotoxins in seven cyanobacterial mat samples. MCNs were identified in six of the mat samples at concentrations from 0.5 to 16.1 µg?g^–1 dry weight. BMAA was found in one sample (528 ng?g^–1 dry weight, total BMAA), as well as two BMAA isomers, 2,4-diaminobutyric acid (DAB) and N-(2-aminoethyl) glycine (AEG) in six samples up to 6.56 and 6.79 μg?g^–1 dry weight, respectively. No anatoxin-a was detected. The findings confirm that MCNs, BMAA and BMAA isomers are preserved under dry herbarium conditions. The ‘Discovery’ cyanobacterial mat samples represent the oldest polar cyanobacterial samples found to contain cyanotoxins to date and provide new baseline data for cyanotoxins in Antarctic freshwater cyanobacterial mats from prior to human activity in Antarctica, the development of the ozone hole and current levels of climatic change.     

我国饮用水源水库微生物多样性研究述评

水源水库的水环境质量和生态安全世人瞩目,微生物在饮用水源水库生态系统的物质循环、能量流动和信息联系中发挥着重要作用,同时其丰度和多样性也是水环境质量监测的重要指标。综述了我国饮用水源水库微生物的作用、丰度、多样性等研究概况,并对水源水库微生物监测方法、蓝细菌分类和毒素特点及未来研究方向进行了讨论。     

The underwater light field in the Bellingshausen and Amundsen Seas (Antarctica)

The underwater light field in the Bellingshausen andAdmundsen Seas was characterised using data collectedduring the R/V Polarstern cruise ANT XI/3, from12.1.94 to 27.3.94. The euphotic zone varied from 24to 100 m depth. Spectral diffuse vertical attenuationcoefficients (K _d ())were determined for 12narrow wavebands as well as for photosyntheticallyavailable radiation (PAR, 400–700 nm): K _d (490)ranged from 0.03 to 0.26 m¹; K _d (550) from0.04 to 0.17 m¹; K _d (683) from 0.04 to0.17 m¹; and K _d (PAR) varied from 0.02 to0.25 m¹. K _d () for wavelengths centred at412 nm, 443 nm, 465 nm, 490 nm, 510 nm, 520 nm and550 nm were significantly correlated with chlorophyllconcentration (ranging from 0.1 to 6 mg m³). Thevertical attenuation coefficients for 340 nm and380 nm ranged from 0.10 to 0.69 m¹ and from 0.05to 0.34 m¹, respectively, and were also highlycorrelated with chlorophyll concentrations. These K _d values indicate that the 1% penetration depthmay reach maxima of 46 m and 92 m for 340 nm and380 nm, respectively. The spectral radiancereflectances (Rr()) for 443 nm, 510 nm and 550 nmwere less than 0.01 sr¹. Rr() for 665 nm and683 nm increased with depth up to 0.2 sr¹ because ofchlorophyll fluorescence. Using a model that predicts downwardirradiances by taking into account the attenuation bywater and absorption by chlorophyll, we show thatchlorophyll fluorescence has a significant influenceon the red downward irradiance (E _d (633, 665, 683))in deeper layers. The ability of the phytoplanktonpopulation to influence the light environment byautofluorescence and absorption processes depends onthe light conditions and on the photoacclimation ofthe cells, represented by the in vivo crosssection absorption coefficient of chlorophyll (a*). Theobtained mean chlorophyll-specific light attenuationcoefficients of phytoplankton in situ (k _d ) are higherthan the in vivo absorption coefficient of chlorophyll,more than to be excepted from the scattering. a*(), m² mg chl¹, decreased due topackaging effect with increasing chlorophyllconcentrations.     

南水北调中线浮游植物群落分布特征及其影响因子

为了解输水明渠有害附着蓝藻的生理生态适应性, 在室内使用小型跑道池模拟输水明渠环境, 选取丝状着生蓝藻泥线藻(Laspinema sp. APE171)为研究对象, 在不同流速、光照强度、UV-A强度、浊度环境条件下, 测定泥线藻的叶绿素a含量和叶绿素荧光等参数, 并对比了泥线藻在水–气界面和底栖两种不同生境中的生理状态差异。结果显示: 当流速V > 0.23 m/s时, 水–气界面处的泥线藻生长被抑制; UV-A强度为440 μW/m²时, 会对水–气界面处的泥线藻光合作用产生明显胁迫; 浊度为100 NUT时, 水–气界面处的泥线藻光合活性最低; 泥线藻在水–气界面生境中对环境因子的变化更敏感。因此在对输水明渠中泥线藻的监测和防控过程中, 应充分考虑流速、UV-A强度、浊度及不同生境对其生长的影响。

     

<Emphasis Type="Italic">In situ</Emphasis> Quantification of Phytoplankton in Reservoirs Using a Submersible Spectrofluorometer

A submersible in situ spectrofluorometer, which permits the differentiation of four algal groups (green algae, diatoms, cryptophytes and cyanobacteria), was used for phytoplankton monitoring in five reservoirs with varying levels of eutrophication and composition of their phytoplankton communities. Data obtained in situ were compared to standard laboratory methods for phytoplankton quantification; concentration of chlorophyll a and microscopy analysis. A high correlation (r = 0.95, n = 96) between chlorophyll a levels using different methods was found in all types of phytoplankton community. Taxonomic analyses and cell counts were closely related to the ratio of algal classes measured by the in situ spectrofluorometer. The submersible device used in the study measures in a continuous mode, which is advantageous in comparison with discrete sampling. This method appears to be a good tool for water quality management and can be used in the detection of natural horizontal and vertical variability in phytoplankton communities or for the early detection of cyanobacterial blooms. The device used in this study is recommended as a screening tool that enables more effective sampling that can be focused on the localities and depths where changes in phytoplankton composition occur.     

Human nails as a biomarker of arsenic exposure from well water in Inner Mongolia: comparing atomic fluorescence spectrometry and neutron activation analysis

Abstract

Arsenic (As) is found naturally in the geological strata within the Ba Men Region of Inner Mongolia, China. A study was conducted to compare the total As measurements from two analytical techniques: instrumental neutron activation analysis (INAA) and atomic fluorescence spectrometry (AFS), and to verify nails as an exposure biomarker in this population. In 1999, nail and water samples were collected in a pilot study. Fingernails and toenails were pooled from 32 participants and analysed for total As by both INAA and AFS. Mean nail As values were 14.8±2.4 and 19.4±2.8 µg?g^?1 (±SEM) for INAA and AFS, respectively. Results from these two methods were significantly correlated (r=0.93, p<0.0001). In 2000, a second study was conducted and INAA was used to measure total As in toenails from 314 Ba Men residents. Well water samples were collected from 121 households and analysed by AFS. A significant correlation was observed between toenail and well water As (r=0.84, p<0.0001). Based on the results, INAA was significantly correlated with AFS and proved to be a reliable measure of nail As levels. In this population, toenail samples are a useful internal As exposure biomarker from drinking water sources.