Revisiting “what do tadpoles really eat?” A 10‐year perspective

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NEOSQUIRREL: a data set of ecological knowledge on Neotropical squirrels

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Hypotheses in urban ecology: building a common knowledge base

Urban ecology is a rapidly growing research field that has to keep pace with the pressing need to tackle the sustainability crisis. As an inherently multi-disciplinary field with close ties to practitioners and administrators, research synthesis and knowledge transfer between those different stakeholders is crucial. Knowledge maps can enhance knowledge transfer and provide orientation to researchers as well as practitioners. A promising option for developing such knowledge maps is to create hypothesis networks, which structure existing hypotheses and aggregate them according to topics and research aims. Combining expert knowledge with information from the literature, we here identify 62 research hypotheses used in urban ecology and link them in such a network. Our network clusters hypotheses into four distinct themes: (i) Urban species traits & evolution, (ii) Urban biotic communities, (iii) Urban habitats and (iv) Urban ecosystems. We discuss the potentials and limitations of this approach. All information is openly provided as part of an extendable Wikidata project, and we invite researchers, practitioners and others interested in urban ecology to contribute additional hypotheses, as well as comment and add to the existing ones. The hypothesis network and Wikidata project form a first step towards a knowledge base for urban ecology, which can be expanded and curated to benefit both practitioners and researchers.     

Ecology and biogeography of the Neotropical otter <Emphasis Type="Italic">Lontra longicaudis</Emphasis>: existing knowledge and open questions

The Neotropical otter, Lontra longicaudis, is considered near threatened by the IUCN, and with declining populations, it is still one of the lesser known species of otter in the world. Like other otter species, L. longicaudis is associated with water courses in a large variety of habitats and biomes across its area of distribution. Here, we present a review of the available literature on L. longicaudis aiming to update information on its distribution, ecology and systematics. We performed online searches using combinations of the words L. longicaudis, river otter, Neotropical otter, nutria and lobito del río, limiting our search to 1972–2016. Recent information on evolutionary history and biogeographic patterns, distribution patterns, as well as on the ecology of the species across a large part of its distribution range, including trophic ecology and intraspecific communication, was retrieved. We found severe gaps in knowledge including aspects of life history, ground validation of new potential distribution areas and long-term population monitoring aiming at designing more efficient conservation measures and techniques. In this context, we conclude by presenting perspectives for future studies.     

Abundance of invasive peacock bass increases with water residence time of reservoirs in southeastern Brazil

Neotropical freshwater ecosystems are experiencing a great expansion in the number of invasive species, which is especially alarming since this region harbours 30% of the world’s fish biodiversity with high levels of endemism. We aimed to evaluate the main predictors of peacock basses (Cichla spp.) abundance outside their native range, which are the Amazon and Tocantins-Araguaia river basins. We used multivariate ordination techniques and multimodel inference to analyse peacock basses abundance in twelve reservoirs of the Paraíba do Sul river basin, southeastern Brazil. Interestingly, reservoirs at higher (southernmost) latitudes, located in more populated areas, had higher water temperature and lower turbidity, due to increased water residence time, and these three variables were also positively correlated with abundance of this warm-water invasive fish. Habitat structure was less important in explaining peacock basses abundance, which was not significantly related to biotic factors (fish species richness and time since peacock basses introduction). We hypothesize that the observed effects of reservoir management on limnological features and peacock bass abundance, particularly water residence time (as a mediator of temperature and turbidity), may apply to other Neotropical basins and could influence the impact of this invader.     

Comparative feeding strategies of yellowfin tuna around St Helena and adjacent seamounts of the South Atlantic Ocean

Yellowfin tuna are the mainstay of the traditional tuna fisheries in St Helena waters, but there is limited knowledge of their ecology and feeding behaviour in the area. In this study yellowfin tuna stomach contents were used to assess spatio-temporal changes in feeding strategy and consider the role of tuna in the local ecosystem. Comparisons of the feeding spectra of yellowfin tuna between inshore regions of St Helena and oceanic seamounts demonstrated that in both areas the species was largely piscivorous. In inshore waters yellowfin consumed more neritic fauna, including significant numbers of crab megalopa, whereas around seamounts the diet included a greater diversity of epi- and mesopelagic fish and squids. The most important fish prey species in inshore waters was the St Helena butterflyfish Chaetodon sanctahelenae, and around seamounts was the pufferfish Lagocephalus lagocephalus. Results indicate that the diet spectrum of yellowfin tuna in St Helena waters is relatively similar to those of conspecifics living in waters with relatively low productivity, with strategies indicative of food-poor ecosystems. The availability of coastal fauna may make areas around islands and seamounts more attractive for feeding aggregations of yellowfin tuna, compared to the open ocean. The relatively unselective feeding of yellowfin tuna means that stomachs can provide valuable data on the species diversity, particularly in remote areas with limited opportunities for dedicated research expeditions.     

The geography of diet variation in Neotropical Carnivora

1. Mammalian carnivores (order Carnivora) perform important regulatory functions in terrestrial food webs. Building a comprehensive knowledge of the dietary patterns of carnivorans and the factors determining such patterns is essential for improving our understanding of the role of carnivorans in ecosystem functioning.
2. In the Neotropics, there are 64 extant species of terrestrial Carnivora, but information on their trophic ecology is diffuse. We compiled and analysed the available quantitative dietary data for Neotropical carnivorans, aiming to detect patterns of intraspecific and interspecific dietary variation at a large geographical scale.
3. The resulting database encompasses information on trophic interactions of 37 native carnivoran species from six families across 14 countries. There are clear geographical biases towards southern Brazil, Chile, and Argentina, and a noticeable knowledge gap within the Amazon. Also, most studies are focused on canids and felids, especially Puma concolor, Panthera onca, Cerdocyon thous, Leopardus pardalis, and Chrysocyon brachyurus, whereas for 27 native species, we found no quantitative dietary information.
4. Neotropical carnivorans consume species from at least 651 genera of vertebrates, invertebrates, and plants. We found clear species-specific dietary patterns and marked differences between Neotropical felids and canids. Although predators generally exhibit high levels of consistency in their diets regarding prey body mass, we detected significant intraspecific variation for all species analysed across study sites.
5. Body mass imposes strong constraints on prey use, but biogeographical differences in prey availability and human influence may drive the geographical variation we found. Overall, observed patterns show not only similarities with resource-use patterns found for carnivorans in other continents, such as nestedness driven by body mass, but also differences, such as high levels of frugivory and consumption of invertebrates by canids. Assessing resource-use patterns is the first step towards a better understanding of processes underlying the organisation of trophic interactions, and is imperative for addressing impacts of defaunation on ecosystems and for informing conservation efforts.

     

Local phylogenetic divergence and global evolutionary convergence of skull function in reef fishes of the family Labridae

The Labridae is one of the most structurally and functionally diversified fish families on coral and rocky reefs around the world, providing a compelling system for examination of evolutionary patterns of functional change. Labrid fishes have evolved a diverse array of skull forms for feeding on prey ranging from molluscs, crustaceans, plankton, detritus, algae, coral and other fishes. The species richness and diversity of feeding ecology in the Labridae make this group a marine analogue to the cichlid fishes. Despite the importance of labrids to coastal reef ecology, we lack evolutionary analysis of feeding biomechanics among labrids. Here, we combine a molecular phylogeny of the Labridae with the biomechanics of skull function to reveal a broad pattern of repeated convergence in labrid feeding systems. Mechanically fast jaw systems have evolved independently at least 14 times from ancestors with forceful jaws. A repeated phylogenetic pattern of functional divergence in local regions of the labrid tree produces an emergent family-wide pattern of global convergence in jaw function. Divergence of close relatives, convergence among higher clades and several unusual 'breakthroughs' in skull function characterize the evolution of functional complexity in one of the most diverse groups of reef fishes.     

Neotropical fish–fruit interactions: eco‐evolutionary dynamics and conservation

Frugivorous fish play a prominent role in seed dispersal and reproductive dynamics of plant communities in riparian and floodplain habitats of tropical regions worldwide. In Neotropical wetlands, many plant species have fleshy fruits and synchronize their fruiting with the flood season, when fruit‐eating fish forage in forest and savannahs for periods of up to 7 months. We conducted a comprehensive analysis to examine the evolutionary origin of fish–fruit interactions, describe fruit traits associated with seed dispersal and seed predation, and assess the influence of fish size on the effectiveness of seed dispersal by fish (ichthyochory). To date, 62 studies have documented 566 species of fruits and seeds from 82 plant families in the diets of 69 Neotropical fish species. Fish interactions with flowering plants are likely to be as old as 70 million years in the Neotropics, pre‐dating most modern bird–fruit and mammal–fruit interactions, and contributing to long‐distance seed dispersal and possibly the radiation of early angiosperms. Ichthyochory occurs across the angiosperm phylogeny, and is more frequent among advanced eudicots. Numerous fish species are capable of dispersing small seeds, but only a limited number of species can disperse large seeds. The size of dispersed seeds and the probability of seed dispersal both increase with fish size. Large‐bodied species are the most effective seed dispersal agents and remain the primary target of fishing activities in the Neotropics. Thus, conservation efforts should focus on these species to ensure continuity of plant recruitment dynamics and maintenance of plant diversity in riparian and floodplain ecosystems.     

Functional redundancy patterns reveal non-random assembly rules in a species-rich marine assemblage

The relationship between species and the functional diversity of assemblages is fundamental in ecology because it contains key information on functional redundancy, and functionally redundant ecosystems are thought to be more resilient, resistant and stable. However, this relationship is poorly understood and undocumented for species-rich coastal marine ecosystems. Here, we used underwater visual censuses to examine the patterns of functional redundancy for one of the most diverse vertebrate assemblages, the coral reef fishes of New Caledonia, South Pacific. First, we found that the relationship between functional and species diversity displayed a non-asymptotic power-shaped curve, implying that rare functions and species mainly occur in highly diverse assemblages. Second, we showed that the distribution of species amongst possible functions was significantly different from a random distribution up to a threshold of ～90 species/transect. Redundancy patterns for each function further revealed that some functions displayed fast rates of increase in redundancy at low species diversity, whereas others were only becoming redundant past a certain threshold. This suggested non-random assembly rules and the existence of some primordial functions that would need to be fulfilled in priority so that coral reef fish assemblages can gain a basic ecological structure. Last, we found little effect of habitat on the shape of the functional-species diversity relationship and on the redundancy of functions, although habitat is known to largely determine assemblage characteristics such as species composition, biomass, and abundance. Our study shows that low functional redundancy is characteristic of this highly diverse fish assemblage, and, therefore, that even species-rich ecosystems such as coral reefs may be vulnerable to the removal of a few keystone species.     

Avian research in the Caribbean: past contributions and current priorities

ABSTRACT The islands of the Caribbean contain habitat of critical importance to a large number of endemic and resident birds, as well as many overwintering Neotropical migrants, and they rank as a globally outstanding conservation priority ecoregion and biodiversity hotspot. Considerable research from the region has focused on the ecology of permanent resident species, and these studies have had particular significance for threatened species management, especially parrot biology and conservation, but also for tropical community ecology in general. Work by ornithologists in the Caribbean has been instrumental in improving our understanding of the ecology of overwintering Neotropical migrants and in developing long‐term monitoring programs. Although Caribbean‐based studies of birds have resulted in significant contributions in many important areas of ecological research, there is a great need for additional research. Especially needed are studies with application to the management of resident species, and studies of how bird populations may be affected by pathogens, parasites, plants, and other types of biotic interactions. Studies focusing on how bird species and populations are affected by global climate change, and cumulative, landscape‐level changes in land use are also needed. Along with additional research, scientists have an important role to play in building capacity to prepare the next generation of biologists in the region who will need to address mounting challenges related to biodiversity protection. As with many conservation efforts, funding is a critical need for almost all organizations and agencies involved in research, conservation action, and capacity building in the West Indies.     

Conservation threats and future prospects for the freshwater fishes of Ecuador: A hotspot of Neotropical fish diversity

Freshwater fish communities in Ecuador exhibit some of the highest levels of diversity and endemism in the Neotropics. Unfortunately, aquatic ecosystems in the country are under serious threat and conditions are deteriorating. In 2018–19, the government of Ecuador sponsored a series of workshops to examine the conservation status of Ecuador's freshwater fishes. Concerns were identified for 35 species, most of which are native to the Amazon region, and overfishing of Amazonian pimelodid catfishes emerged as a major issue. However, much of the information needed to make decisions across fish groups and regions was not available, hindering the process and highlighting the need for a review of the conservation threats to Ecuador's freshwater fishes. Here, we review how the physical alteration of rivers, deforestation, wetland and floodplain degradation, agricultural and urban water pollution, mining, oil extraction, dams, overfishing, introduced species and climate change are affecting freshwater fishes in Ecuador. Although many of these factors affect fishes throughout the Neotropics, the lack of data on Ecuadorian fish communities is staggering and highlights the urgent need for more research. We also make recommendations, including the need for proper enforcement of existing environmental laws, restoration of degraded aquatic ecosystems, establishment of a national monitoring system for freshwater ecosystems, investment in research to fill gaps in knowledge, and encouragement of public engagement in citizen science and conservation efforts. Freshwater fishes are an important component of the cultural and biological legacy of the Ecuadorian people. Conserving them for future generations is critical.     

Improving Pantanal fish species recognition through taxonomic ranks in convolutional neural networks

Fish species recognition is an important task to preserve ecosystems, feed humans, and tourism. In particular, the Pantanal is a wetland region that harbors hundreds of species and is considered one of the most important ecosystems in the world. In this paper, we present a new method based on convolutional neural networks (CNNs) for Pantanal fish species recognition. A new CNN composed of three branches that classify the fish species, family and order is proposed with the aim of improving the recognition of species with similar characteristics. The branch that classifies the fish species uses information learned from the family and order, which has shown to improve the overall accuracy. Results on unrestricted image dataset showed that the proposed method provides superior results to traditional approaches. Our method obtained an accuracy of 0.873 versus 0.864 of traditional CNN in recognition of 68 fish species. In addition, our method provides fish family and order recognition, which obtained accuracies of 0.938 and 0.96, respectively. We hope that, with these promising results, an automatic tool can be developed to monitor species in an important region such as the Pantanal.     

Biodiversity of Cetoniinae beetles (Coleoptera: Scarabaeidae) in introduced and native habitats in the Brazilian Atlantic Forest

The ecology of the beetles of the subfamily Cetoniinae (Coleoptera: Scarabaeidae) is relatively poorly known worldwide. In the neotropics in particular, there are far less studies than in other biogeographic regions. In part due to this lack of knowledge, cetoniines are not considered indicators of habitat quality in the Neotropical region. In this study, we compare the abundance, diversity, and species composition of cetoniines in three different habitats in Brazil: two exotic (Brachiaria pasturelands and eucalyptus plantation) and one native (Brazilian Atlantic Forest). We also provide diagnostic images of both sexes and of the genitalia of males of all species to facilitate species identification in further studies. The beetles were collected weekly from September to December 2012 with traps baited with fermented fruit, in five eucalyptus plantations (Eucalyptus grandis Hill ex Maiden), five exotic pasturelands (Brachiaria spp.), and five patches of Brazilian Atlantic Forest. The abundance and diversity of cetoniines was found to be lower in the eucalyptus plantations and about the same in the forest and pasturelands. The low diversity found and the little information available on the ecology of Neotropical Cetoniinae is insufficient to propose these beetles as candidates for the habitat evaluation in Brazil.     

Climate change, conservation and management: an assessment of the peer-reviewed scientific journal literature

Recent reviews of the conservation literature indicate that significant biases exist in the published literature regarding the regions, ecosystems and species that have been examined by researchers. Despite the global threat of climatic change, similar biases may be occurring within the sub-discipline of climate-change ecology. Here we hope to foster critical thought and discussion by considering the directions taken by conservation researchers when addressing climate change. To form a quantitative basis for our perspective, we assessed 248 papers from the climate change literature that considered the conservation management of biodiversity and ecosystems. We found that roughly half of the studies considered climate change in isolation from other threatening processes. We also found that the majority of surveyed scientific publications were conducted in the temperate forests of Europe and North America. Regions such as Latin America that are rich in biodiversity but may have low adaptive capacity to climate change were not well represented. We caution that such biases in research effort may be distracting our attention away from vulnerable regions, ecosystems and species. Specifically we suggest that the under-representation of research from regions low in adaptive capacity and rich in biodiversity requires international collaboration by those experienced in climate-change research, with researchers from less wealthy nations who are familiar with local issues, ecosystems and species. Furthermore, we caution that the propensity of ecologists to work in essentially unmodified ecosystems may fundamentally hamper our ability to make useful recommendations in a world that is experiencing significant global change.     

Feeding studies take guts – critical review and recommendations of methods for stomach contents analysis in fish

Studies on the feeding ecology of fish are essential for exploring and contrasting trophic interactions and population and community dynamics within and among aquatic ecosystems. In this respect, many different methods have been adopted for the analysis of fish stomach contents. No consensus has, however, been reached for a standardised methodology despite that for several decades there has been an ongoing debate about which methodical approaches that should be preferred. Here, we critically review and scrutinise methods, addressing their strengths and weaknesses and emphasising inherent problems and possible pitfalls in their use. Although our critical assessment reveals that no completely ideal approach exists, appropriate and reliable procedures can be adopted through careful considerations and implementation. In particular, we advocate that different objectives require different methodical approaches and the choice of method should therefore be closely linked to the research questions that are addressed. For a standardisation of methods, we recommend a combination of the relative-fullness and presence–absence methods as the optimal approach for the commonly applied feeding studies addressing relative dietary composition in terms of prey diversity and abundance. Additionally, we recommend the gravimetric method for objectives related to the quantification of food consumption rates and the numerical method for prey selection studies. DNA-based dietary analysis provides a new and promising complementary approach to visual examination of stomach contents, although some technical challenges still exist. The suggested method standardisation facilitates comparisons across species, ecosystems and time and will enhance the applicability and benefits of fish feeding studies in trophic ecology research.     

Climate effects on fish body size–trophic position relationship depend on ecosystem type

The energetic demand of consumers increases with body size and temperature. This implies that energetic constraints may limit the trophic position of larger consumers, which is expected to be lower in tropical than in temperate regions to compensate for energy limitation. Using a global dataset of 3635 marine and freshwater ray‐finned fish species, we addressed if and how climate affects the fish body size–trophic position relationship in both freshwater and marine ecosystems, while controlling for the effects of taxonomic affiliation. We observed significant fish body size–trophic position relationships for different ecosystems. However, only in freshwater systems larger tropical fish presented a significantly lower trophic position than their temperate counterparts. Climate did not affect the fish body size–trophic position relationship in marine systems. Our results suggest that larger tropical freshwater fish may compensate for higher energetic constraints feeding at lower trophic positions, compared to their temperate counterparts of similar body size. The lower latitudinal temperature range in marine ecosystems and/or their larger ecosystem size may attenuate and/or compensate for the energy limitation of larger marine fish. Based on our results, temperature may determine macroecological patterns of aquatic food webs, but its effect is contingent on ecosystem type. We suggest that freshwater ecosystems may be more sensitive to warming‐induced alterations in food web topology and food chain length than marine ecosystems.     

The Neotropical otter Lontra longicaudis: a comprehensive update on the current knowledge and conservation status of this semiaquatic carnivore

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