Tree diversity,congruence and endemism: Himalaya ‘The land of diversity’

Trees are acknowledged as most valued gift of nature and saviour of earth, enhancing and protecting landscapes, ecosystems and production systems. An authentic database of tree flora missing from local to global scale has immense value. Formulation of conservation and management policies are difficult owing to huge variation in number of species, lack of tree cover and quantification of tree diversity. To endow with a pragmatic groundwork for quantification of tree diversity of IHR, we had published an inventory of 1466 tree species (Angiosperms and Gymnosperms) along with their taxonomically vetted scientific name, distributional range, phenological attributes (leaf persistence and flower colour), use value, congruence, endemism and threatened species. One more database on tree diversity of Western Himalaya was also published with an annotated list of tree flora compiled from unrestricted literature and e-floras related to the regions. The present paper is an attempt to bring out the overall representation of tree flora of IHR, its distributional pattern, congruence, and endemism criterion in Western and Eastern Himalaya along with correlation between the regions as well as states.

     

The effects of fishing on the diversity,biomass and trophic structure of Seychelles’ reef fish communities

A fishery independent underwater visual census technique was used to assess the effects of fishing on the diversity, biomass and trophic structure of the diurnally active non-cryptic reef-associated fish communities of the Seychelles. One hundred and thirty four species associated with three significantly different types of reef habitat were censused at one unfished ground and in six fishing grounds subject to different fishing intensity and the biomass of several species targeted by the fishery. The diversity of families containing target species (lutjanidae, lethrinidae) was significantly higher at unfished and lightly fished sites as was the total biomass of the fish community and the biomass of piscivorous, piscivorous/invertebrate feeding and herbivorous trophic groups. However, there was no indication that the biomass of non-target species increased in response to the removal of their predators by fishing. The findings of this study are significant for fishery managers because they suggest that the intensive differential cropping of top predators will not necessarily lead to increases in the biomass and productivity of their prey.     

The relationship between ‘labile soil phosphorus’ and the aluminium and iron-bound phosphorus in tropical soils

Summary When millet was grown in short-term pot experiments in the greenhouse, in the red-clay and sand-veld soils of Southern Rhodesia and the red clay loams of Uganda, a very close correlation was obtained between labile soil phosphorus and the aluminium- and iron-bound phosphate in these soils. A large increase in labile soil phosphorus was obtained when millet was grown in Uganda soils that had been stored in the air-dry condition for 15 weeks, and a greater increase after 24 weeks. The increase is attributed to the mineralisation of soil organic phosphorus. The maximum temperature used to dry the soils had no effect on the labile soil phosphorus values obtained.     

Species–soil associations, disturbance, and nutrient cycling in an Australian tropical rainforest

Resource availability and disturbance are important factors that shape the composition, structure, and functioning of ecosystems. We investigated the effects of soil fertility and disturbance on plant–soil interactions and nutrient cycling in a diverse tropical rainforest. Our goal was to determine how common soil specialisation is among species and how plant–soil interactions affect ecosystem functioning in the presence of disturbance. Most species (59%) showed significant fidelity to either fertile (basalt) or infertile (schist) soils. Obligate schist specialists (six species) contributed 39 and 37% to total stand-level basal area and aboveground net primary productivity, respectively. High nutrient use efficiency of schist specialists reduced the rates of within-stand nutrient cycling through the production of nutrient-poor plant tissues and litter. Although forests on schist soils had higher basal area and similar rates of productivity to forests on basalt, uptake of Mg, K, P, and N were markedly less on schist than on basalt, particularly after a cyclone disturbance. Stands on schist soils were also less affected by the cyclone and, as a result, contributed less (ca. 50%) Mg, K, P, and N inputs to the forest floor (via litterfall) than stands on basalt soils. System “openness” (i.e. the risk of nutrient loss) from cyclone-affected basalt forests was minimised by high rates of uptake following disturbance and large effective cation exchange capacities of soils. Soil–plant-disturbance interactions are likely to engender different fitness-enhancing strategies on fertile and infertile soils, possibly leading to the development and/or maintenance of diversity in rainforests.     

A ‘fast-food approach’ to the standardization of quadratic diversity

Abstract

Intuitively, a community composed of ecologically dissimilar taxa is more diverse than a community composed of more similar taxa. However, since traditional diversity indices such as Shannon's entropy or Simpson's diversity are computed solely from the relative abundances of a given species assemblage, they cannot account for ecological differences between species. There have been recent developments regarding the use of quadratic entropy, a diversity index that incorporates both species relative abundances and a measure of the pairwise ecological differences between species. In this paper we firstly show that under some specific circumstances quadratic entropy can be additively decomposed into α- β- and γ-diversities, a property that renders it a desirable measure of diversity in the ecological practice. Next, we suggest a quick and simple method for obtaining a standardized version of quadratic entropy that may allow an easier interpretation of the resulting diversity values.     

Structure,zonation, and species diversity of the mayfly communities of the Belá River basin,Slovakia

Four mayfly taxocoena which correspond to zones in the river continuum concept of Vannote et al. (1980) and to the zonation concept of Illies & Botoaneanu (1963), were distinguished by cluster analysis in the Belá River basin, Slovakia.By principal components analysis, taxocoena were shown to be separated along a complex gradient dominated by altitude and slope.An increase of species diversity was observed downstreams. The species-diversity data can be fitted to a geometric series, and interpreted by the niche preemption hypothesis. Equitability and the ratio of Baetidae to Heptagenidae are supposed to indicate ecological conditions.     

The nitrogen cycle in a ‘Terra Firme’ rainforest on oxisol in the Amazon territory of Venezuela

Standing stocks and fluxes of nitrogen, including nitrogen fixation and denitrification, were measured in a tropical rainforest on Oxisol in the Amazon Territory of Venezuela. The standing stock of nitrogen was comparable to that of temperate forests, but was higher than that in an adjacent forest on Spodosol. Fluxes were higher than in forests in the temperate zone, but lower than in another tropical forest on more fertile soil. Even though nitrogen was abundant, this does not mean that nitrogen could not be limiting to agriculture if the forest is cleared and the land cultivated. The nitrogen fixing and nitrogen conserving mechanisms are dependent upon the structure of the undisturbed forest, and destruction of the forest would eventually decrease the input of nitrogen to the soil.     

The language of systematics,and the philosophy of ‘total evidence’

This contribution analyses the primacy of classification over generalization, and the philosophy of total evidence that emerges from the relation of homology to character statements. Primary conjectures of homology are basic character statements, i.e. statements that predicate properties of organisms, properties that are instantiated by those organisms and/or their parts. Secondary conjectures of homology are embedded in a second‐level (metalinguistic) discourse that turns on the coherence or incoherence of those basic character statements relative to a hierarchy. The coherence or incoherence of character statements is a logical relation between statements, not a causal (historical) relation between organisms. The choice of the hypothesis of relationships that is supported by the largest set of coherent basic character statements is based on the empirical presupposition that the properties referred to by the set of coherent character statements are grounded in causally efficacious relations of inheritance and ontogeny, and co‐instantiated because they are inherited through common ancestry (Hennig's auxiliary principle). Unless that empirical presupposition is causally grounded, phylogeny reconstruction is of an inherently probabilistic nature, whether under parsimony or other models of analysis. The causal grounding of a coherent set of character statements typically seeks a link between character statements and causally efficacious generative mechanisms for morphological characters (as is defeasibly indicated by topology and connectivity), or secondary structure information for molecular characters.     

The size and diversity of the soil seed banks and the light requirements of the species in sunny and shady natural communities of the Białowieża Primeval Forest

The research was conducted in two natural forest communities: Potentillo albae-Quercetum (oak forest) which allows much light to reach the forest floor and Tilio-Carpinetum typicum (hornbeam forest) which shades the herb layer heavily. The seed banks were estimated from numbers of seedlings emerging from soil samples over one growing season.(1) Our results confirm the hypothesis that persistent seed banks are mainly formed by species with high light requirements. Of the species found predominantly in the seed bank and absent from the herb layer or occurring there very rarely in both communities 83% of species and 70% of seedlings were strongly light-demanding (Ellenberg's light index 6–9). However, the results do not support the hypothesis that seed banks in natural deciduous forest communities are small, poor in species and do not reflect the species composition of herb layer.(2) The seed banks of both communities were rich in species and relatively large. Species richness in the oak forest turned out to be higher than in the hornbeam forest (51 vs 45 species/2.4 m₂), but size was smaller (2659 vs 5789 seedlings/2.4 m₂). In the oak forest the most abundant species in the seed bank was Galium boreale, but it constituted only 19% of the total number of seedlings, whereas in the hornbearn forest the dominant species, Urtica dioica, constituted 57% of the total.(3) In each community the species composition of the seed bank and the herb layer was very similar (>70%).(4) The seed bank was more diverse in the oak forest than in the hornbeam forest (H 2.34 vs 1.68).(5) The seed banks of both communities differed in the contribution of species with varied light requirements; in the sunny oak forest species with high light requirements dominated, whereas in the shady hornbeam forest both strongly and moderately light-demanding species had similar contributions.Nomenclature: Follows Ehrendorfer (1973) and Matuszkiewicz (1981).     

The oldest ‘amphipterygid’ damselfly of tropical affinities in the Paleocene of Menat (Zygoptera: Eucaloptera)

The new damselfly genus and species Valerea multicellulata is described from the Paleocene of Menat (France), a Lagerstatte with many fossil insects, plants and vertebrates with high paleontological value. Aquatic insects are very scarce in this outcrop, this damselfly being the fourth described Odonata. Its closest modern relatives belong to the Amphipterygidae or the Devadattidae, families with very narrow tropical extant distributions. This new fossil allows us to confirm the tropical affinities of the odonatan fauna of the Menat paleolake communities. It also shows that the amphipterygids were clearly more widespread during the Paleogene than today, probably in relation to the worldwide warm and equable climate in the Paleocene.

http://zoobank.org/urn:lsid:zoobank.org:act:3F631097-DE0B-40FA8227-9C12F55DBAB4     

Assessment of vegetation and soil conditions in restored mangroves interrupted by severe tropical typhoon ‘Chan-hom’ in the Philippines

Using a space-for-time substitution approach, we investigated the effects of a typhoon on the vegetation and soil development trajectories of monospecific stands of Rhizophora mucronata mangroves of different ages (6-, 8- 10-, 11-, 12-, 17-, 18- and 50-year stands). The vegetation and soil parameters were compared to a reference system comprised of mature, natural mangrove stands. Pre-typhoon measures of vegetation and soil parameters were compared with 1-mo, 7-mo and 9-mo post-typhoon. Prior to the occurrence of the typhoon, there were clear patterns of vegetation and soil development with age of the stands. The development trajectory was however interrupted by the occurrence of the typhoon. Severe damage was more apparent in older mangrove stands (11- and 18- year stands) with very low to no damage in the younger stands. The typhoon-impacted sites experienced a number of changes, including: complete defoliation; reduced living tree densities of 61–69 %; decreased above-ground biomass of 70–79 %; increased soil nutrient levels of 40–60 %; more waterlogged soils by at least 113 % and increased soil temperature of 8–10 °C. Cumulative tree mortality, compounded by the lack of seedling recruits and unfavourable soil conditions may limit long-term recovery of the typhoon-impacted stands.     

The Fate of the Method of ‘Paradigms’ in Paleobiology

An earlier article described the mid-twentieth century origins of the method of “paradigms” in paleobiology, as a way of making testable hypotheses about the functional morphology of extinct organisms. The present article describes the use of “paradigms” through the 1970s and, briefly, to the end of the century. After I had proposed the paradigm method to help interpret the ecological history of brachiopods, my students developed it in relation to that and other invertebrate phyla, notably in Euan Clarkson’s analysis of vision in trilobites. David Raup’s computer-aided “theoretical morphology” was then combined with my functional or adaptive emphasis, in Adolf Seilacher’s tripartite “constructional morphology.” Stephen Jay Gould, who had strongly endorsed the method, later switched to criticizing the “adaptationist program” he claimed it embodied. Although the explicit use of paradigms in paleobiology had declined by the end of the century, the method was tacitly subsumed into functional morphology as “biomechanics.”     

Impacts of abiotic factors on the fungal communities of ‘Honeycrisp’ apples in Canada

The maintenance of the beneficial plant microbiome to control plant pathogens is an emerging concept of disease management, and necessitates a clear understanding of these microbial communities and the environmental factors that affect their diversity and compositional structure. As such, studies investigating the microbiome of economically significant cultivars within each growing region are necessary to develop adequate disease management strategies. Here, we assessed the relative impacts of growing season, management strategy, and geographical location on the fungal microbiome of ‘Honeycrisp’ apples from seven different orchard locations in the Atlantic Maritime Ecozone for two consecutive growing years. Though apple fruit tissue was dominated by relatively few fungal genera, significant changes in their fungal communities were observed as a result of environmental factors, including shifts in genera with plant-associated lifestyles (symbionts and pathogens), such as Aureobasidium, Alternaria, Penicillium, Diplodia, and Mycosphaerella. Variation in fungal composition between different tissues of fruit was also observed. We demonstrate that growing season is the most significant factor affecting fungal community structure and diversity of apple fruit, suggesting that future microbiome studies should take place for multiple growing seasons to better represent the host–microbiome of perennial crops under different environmental conditions.     

Historical plant records enlighten the conservation efforts of ferns and Lycophytes’ diversity in tropical China

Historical records, e.g., herbarium vouchers, contain information about species distribution since the early days of the scientific exploration of floras until today. These data provide crucial evidence to map the biodiversity of the area of interest and most importantly enable the evaluation of the conservation effectiveness for a given group of organisms. This study aimed to explore the ferns and lycophytes’ diversity of Xishuangbanna Dai Autonomous Prefecture in tropical China with special emphasis on conservation efforts provided by the currently established protected areas (PAs). Instead of relying exclusively on current observation, the database was compiled from digitalized herbarium vouchers and publications being explored with special attention on the temporal and spatial dimensions of collecting efforts. Utilizing the indices including species richness, weighed endemism, corrected weighted endemism, and beta diversity, hotspots of ferns and lycophytes’ diversity were identified. In turn, the proportion of hotspots located outside PAs was estimated as a measure of conservation gaps in Xishuangbanna. Our results revealed a long collecting history of ferns and lycophytes in Xishuangbanna and this prefecture accumulated a considerable number of historical records covering 20.2 % of Chinese and 3.6% of global fern diversity. The accumulation of historical records showed strong parallelism to the historical events shaping modern China. The spatial distribution of ferns and lycophytes in Xishuangbanna was characterized by a concentration of species richness in southern valleys and endemism in western and northern mountains. In terms of conservation, existing PAs showed higher effectiveness in the protection of species richness, whereas lower effectiveness was observed in the protection of endemism and beta diversity. Our research provided a key reference for understanding the diversity and conservation of ferns and lycophytes in Xishuangbanna, as well as highlighting the locality for future collecting and conservation efforts.     

What is the effect of soil use on ant communities?

Studies on ant communities in agroecosystems have contributed to the knowledge of the effect of agricultural activities on biological communities. The aim of this study is to explain the effect of soil use on ant communities. We tested the hypothesis that there was a decrease in ant species richness and a change in the species composition at habitats with more intense soil use. We collected ants using sardine baits, subterranean traps and direct sampling at four habitats with different soil use (secundary forest, Acacia forestry, initial stage of succession and mixed crops). The ant species richness did not decrease with intensity of soil use. In successional habitat the species numbers collected using sardine baits and subterranean traps were significantly different. Species composition of communities had a pronounced variation, with the epigaeic and hypogaeic ant faunas of the habitat with high intense soil use (mixed crops) had low similarity with ant communities of the three other habitats. The predator species were restricted to habitats with low intensity of soil use. Then, species composition could better reflect the functional changes on ant communities than species richness. Our data can help to choose the component of ant community that better reflect the response of biodiversity to agricultural impacts.