A new ciliary feeding structure in an ophiuroid echinoderm

The genital shields which form the walls of the bursal slits in Ophiura texturata are covered by a precisely orientated arrangement of ciliated ridges and non-ciliated grooves. An electron microscopic examination has revealed many mucous cells associated with this structure and a catecholamine-containing nerve plexus underlying it. An examination of the currents produced by this ciliated structure suggest that it is associated with suspension feeding and preliminary results indicate that the secretion of mucus is under neurol control. Specialized structures of this type have not been previously described in ophiuroids and are only present in the members of certaln families. The interest in these structures is not just in relation to feeding mechanisms in ophiuroids but they also provide a useful specialized preparation for the study of some aspects of the function of the subepidermal nerves in echinoderms.     

The Influence of Natural Surface Microtopographies on Fouling

Multiple antifouling strategies of marine organisms may consist of combinations of physical, chemical and mechanical mechanisms. In this study, the role of surface microtopography (?<?500?μm) of different marine organisms, such as Cancer pagurus, Mytilus edulis, Ophiura texturata and the eggcase of Scyliorhinus canicula, has been investigated as a possible component of their defence systems. High resolution resin replicates of these natural surface structures were exposed to natural fouling in field experiments. Abundances of recruits were determined and compared to those on untextured, but otherwise identical, control surfaces to quantify the influence of the different microtopographies on fouling rates. Antifouling effects of microtopographies varied with type of microtopography and coloniser species. The surface microtopography of C. pagurus significantly rejected macrofoulers. The surface structures of the eggcase and O. texturata had repellent effects on microfoulers. Barnacle settlement was temporarily reduced on surface microtopographies of M. edulis and the eggcase. These results emphasise the promising non-toxic antifouling properties of microtextured surfaces.     

Faunenverarmung in einem Schlickgebiet in der Nähe Helgolands

Variations in abundance and species composition of macro-zoobenthos were studied at a sublittoral muddy-bottom station in the inner part of the German Bight from 1969 to 1976. The fauna of this area can be included in the classicalAbra alba community. A total of 98 species were found in 62 samples. Of these, only 4 species occurred in all samples:Nucula nitidosa, Diastylic rathkei, Ophiura texturata andNephtys hombergii. Species richness has declined since 1969. Populations of several species disappeared in the investigated area and its surroundings. Other populations are shown to exhibit remarkable fluctuations in abundance with sometimes heavy spatfalls or sudden breakdowns in population density, mainly during late summer. The long-term trend of impoverishment of the fauna is attributed to the development of anaerobic conditions in the muddy sediment. Such conditions are favoured by stable, thermohaline strafications of the water during summer, resulting in low oxygen levels and, probably, enrichment of hydrogen sulfide even in near-bottom water. Moreover, both continuou influx into the area of Elbe water, rich in suspended matter and nutrients and dumping of sewage sludge about 8 km east of the investigated area are considered to have increased the strees on the bottom fauna.     

Classical macroautophagy in Lobivia rauschii (Cactaceae) and possible plastidial autophagy in Tillandsia albida (Bromeliaceae) tapetum cells

The tapetum in anthers is a tissue that undergoes programmed cell death (PCD) during the production of pollen. We observed two types of autophagy prior to cell death. In Lobivia rauschii (Cactaceae), tapetum cells showed plant-type autophagosomes–autolysosomes, which have been found previously exclusively in root meristem cells. The autophagic structures were formed by a network of tubules which apparently merged laterally, thereby sequestering a portion of the cytoplasm. The organelles observed in the sequestered material included multilamellar bodies, which have not been reported earlier in these organelles. By contrast, Tillandsia albida (Bromeliaceae) tapetum cells contained no such organelles but showed plastids that might possibly carry out autophagy, as they contained portions of the cytoplasm similar to the phenomenon reported earlier in Phaseolus and Dendrobium. However, the ultrastructure of the T. albida plastids was different from that in the previous reports. It is concluded that in L. rauschii classical plant macroautophagy was involved in degradation of the cytoplasm, while in T. albida such classical macroautophagy was not observed. Instead, the data in T. albida suggested the hypothesis that plastids are able to carry out degradation of the cytoplasm.     

Complete genome sequence of producer of the glycopeptide antibiotic Aculeximycin Kutzneria albida DSM 43870T,a representative of minor genus of Pseudonocardiaceae

Background

Kutzneria is a representative of a rarely observed genus of the family Pseudonocardiaceae. Kutzneria species were initially placed in the Streptosporangiaceae genus and later reconsidered to be an independent genus of the Pseudonocardiaceae. Kutzneria albida is one of the eight known members of the genus. This strain is a unique producer of the glycosylated polyole macrolide aculeximycin which is active against both bacteria and fungi. Kutzneria albida genome sequencing and analysis allow a deeper understanding of evolution of this genus of Pseudonocardiaceae, provide new insight in the phylogeny of the genus, as well as decipher the hidden secondary metabolic potential of these rare actinobacteria.

Results

To explore the biosynthetic potential of Kutzneria albida to its full extent, the complete genome was sequenced. With a size of 9,874,926 bp, coding for 8,822 genes, it stands alongside other Pseudonocardiaceae with large circular genomes. Genome analysis revealed 46 gene clusters potentially encoding secondary metabolite biosynthesis pathways. Two large genomic islands were identified, containing regions most enriched with secondary metabolism gene clusters. Large parts of this secondary metabolism “clustome” are dedicated to siderophores production.

Conclusions

Kutzneria albida is the first species of the genus Kutzneria with a completely sequenced genome. Genome sequencing allowed identifying the gene cluster responsible for the biosynthesis of aculeximycin, one of the largest known oligosaccharide-macrolide antibiotics. Moreover, the genome revealed 45 additional putative secondary metabolite gene clusters, suggesting a huge biosynthetic potential, which makes Kutzneria albida a very rich source of natural products. Comparison of the Kutzneria albida genome to genomes of other actinobacteria clearly shows its close relations with Pseudonocardiaceae in line with the taxonomic position of the genus.

Electronic supplementary material

The online version of this article (doi:10.1186/1471-2164-15-885) contains supplementary material, which is available to authorized users.     

The giant neurone system in ophiuroids

Summary The nervous system of Ophiura texturata contains nerve fibres and cell bodies that are an order of magnitude larger than anything previously described in the Asteroidea and Echinoidea. These large nerve cells are designated giant fibres. Giant nerve cells are present in both the ectoneural and hyponeural nervous system. The layout of these nerve cells is described and it is shown that the organization is repeated in each segmental ganglion that makes up the radial nerve cord. The circumoral nerve ring is composed, in the main, of tracts of nerve fibres joining the radial nerves, and it contains only limited areas of neuropil associated with the alimentary canal and muscles of the disc and jaws. Degeneration studies have shown that each segmental ganglion of the radial nerve cords contains a discrete population of neurones separate from adjacent ganglion and that there are not anatomically continuous giant fibres along the whole length of the nerve cord.     

Bradyrhizobium sp. Strains That Nodulate the Leguminous Tree Acacia albida Produce Fucosylated and Partially Sulfated Nod Factors

We determined the structures of Nod factors produced by six different Bradyrhizobium sp. strains nodulating the legume tree Acacia albida (syn. Faidherbia albida). Compounds from all strains were found to be similar, i.e., O-carbamoylated and substituted by an often sulfated methyl fucose and different from compounds produced by Rhizobium-Mesorhizobium-Sinorhizobium strains nodulating other species of the Acaciae tribe.     

Vegetation-environment relations of a Middle Zambezi floodplain

Detrended correspondence analysis was used to study the relationships between environmental factors and the species composition of vegetation on Zambezi River alluvium downstream of the Kariba hydroelectric dam. Grass, sedge and woody species were recorded in 73 stands in Mana Pools National Park, Zimbabwe. Grass and sedge species composition was related to the soil moisture regime, as indexed by soil texture and flooding frequency. The first woody plant ordination axis was related to a stand development gradient; Acacia albida was a pioneer species on lowlying sandbanks and the woody species richness of stands increased with their height above the Zambezi River. Two-way indicator species analysis identified 7 vegetation types which could be separated on the basis of their topsoil texture and flooding frequency. The types were: sandbanks; young A. albida woodland; A. albida woodland; A. albida dominated mixed woodland; mixed riverine woodland with understory; mixed riverine woodland; and grassland on clay soils.     

The giant neurone system in ophiuroids

Summary The morphology of the circumoral nerve ring of an ophiuroid, Ophiura texturata, is described. Particular attention is given to a system of fibres which are giant by echinoderm standards, and which occur both in the ectoneural and hyponeural parts of the nerve ring. The giant fibres in the ectoneural tissue do not show the complicated pattern of distribution present in the segmental ganglia of the radial nerves. The main areas of neuropil in the ectoneural tissue are associated with small axon bundles which leave the nerve ring to innervate the gut and disc. The hyponeural tissue is exclusively motor and is involved in the innervation of the main radial and inter-radial muscles of the disc. Branches of the motor nerves are also associated with juxtaligamental tissue, the secretory products from which are thought to influence the plasticity of collagenous connective tissue. The structure of the circumoral nerve ring suggests that it serves as a functional connection between the nerve cords in adjacent radii. The ultrastructural evidence does not support the view that the circumoral nerve ring represents a central nervous system.     

Mycorrhizal inoculation as an alternative for the sustainable production of Mimosa tenuiflora seedlings with improved growth and secondary compounds content

In this study, we report the effects of arbuscular mycorrhizal fungi (AMF) and increasing doses of phosphorus (P) on the growth and production of secondary metabolites in Mimosa tenuiflora, a medicinal species native to Brazil. We used a completely randomized design with four inoculation treatments: Control not inoculated (1); Claroideoglomus etunicatum (2); Gigaspora albida (3); and C. etunicatum + G. albida (4) and four doses of P; P0 – baseline dose, P8, P16 and P32. After 70 d in a greenhouse, growth, mycorrhizal variables, biochemical and phytochemical parameters were evaluated. Compared to non-mycorrhizal plants, mycorrhized M. tenuiflora seedlings showed greater: growth, greater photosynthetic performance and content of soluble carbohydrates and secondary metabolites, with the most significant benefits occurring in soil with low to moderate P content (up to 16 mg kg^?1). The plant growth is severely restricted at low P levels, but the addition of AMF appears to remove this limiting factor. Although M. tenuiflora responds to levels of phosphate fertilization, it responds well to mycorrhizal inoculation, especially with G. albida, which promotes benefits for the initial growth and secondary metabolite content in this plant species of medical and potential commercial interest and may be used instead of phosphate fertilizer.     

The origin and paleoecologic significance of the trace fossil Asteriacites in the Pennsylvanian of Kansas and Missouri

The trace fossil Asteriacites, recorded in Cambrian to Recent shallow- and deep-marine facies, is traditionally interpreted as the resting trace of asterozoans. Well-preserved specimens of A. lumbricalis are abundant in Pennsylvanian (Upper Carboniferous) shallow- and marginal-marine siliciclastic deposits of eastern Kansas and western Missouri. Detailed morphologic analysis of these specimens suggests that they record the activities of mobile epifaunal ophiuroids. Evidence of a brittle star (ophiuroid) producer rather than sea star (asteroid) is provided by (1) trace-fossil morphologic features reflecting the anatomy of the producer (e.g., well-differentiated central structure, slender vermiform arms) and ophiuroid burrowing technique (e.g., proximal arm expansion, arm branching), and (2) mode of occurrence (e.g., gregarious behavior, horizontal and vertical repetition). Vertical and horizontal repetition produces complex aggregates of A. lumbricalis that are interpreted either as escape structures (fugichnia) or as feeding structures, respectively. Ophiura texturata is proposed as a modern analogue for the A. lumbricalis producer, based on inferred life habit and feeding behavior. Asteriacites lumbricalis is present in two different intertidal trace-fossil assemblages. The first assemblage is characterized by high diversity and records tidal flats developed outside of embayments under normal marine conditions. The second assemblage consists of A. lumbricalis together with a few other ichnotaxa and represents a depauperate association that developed in restricted tidal flats within an embayment or estuarine setting. This challenges the conventional view of Asteriacites as a normal-marine salinity indicator. Some echinoderms, and particularly asterozoans, penetrate and inhabit modern environments of depressed salinity. The presence of Asteriacites in Pennsylvanian marginal-marine facies of Kansas and Missouri provides evidence that ophiuroids had adapted to brackish-water conditions by the late Paleozoic.     

A New Real-Time PCR for the Detection of Plasmodium ovale wallikeri

It has been proposed that ovale malaria in humans is caused by two closely related but distinct species of malaria parasites: P. ovale curtisi and P. ovale wallikeri. We have extended and optimized a Real-time PCR assay targeting the parasite’s small subunit ribosomal RNA (ssrRNA) gene to detect both these species. When the assay was applied to 31 archival blood samples from patients diagnosed with P. ovale, it was found that the infection in 20 was due to P. ovale curtisi and in the remaining 11 to P. ovale wallikeri. Thus, this assay provides a useful tool that can be applied to epidemiological investigations of the two newly recognized distinct P. ovale species, that might reveal if these species also differ in their clinical manifestation, drugs susceptibility and relapse periodicity. The results presented confirm that P. ovale wallikeri is not confined to Southeast Asia, since the majority of the patients analyzed in this study had acquired their P. ovale infection in African countries, mostly situated in West Africa.     

Two new pyrrolizidine alkaloids from Crotalaria albida

Two new pyrrolizidine alkaloids, namely, neocroalbidine and neocroalbidinone, were isolated from the herbs of Crotalaria albida. Their structures were established using a combination of NMR spectroscopy and mass spectrometry techniques. The absolute stereochemistry of the two alkaloids presented herein was determined by single-crystal X-ray diffraction analysis.     

Distribution of echinoderms and their larvae in the southwestern Peter the Great Bay, Sea of Japan

Based on results of processing planktonic and benthic samples collected in 1996 and 1997, a spatial distribution of echinoderms in the bottom and of their larvae in the plankton were collated for the water area of the Southern region of the Far Eastern State Biosphere Marine Reserve. Some correlation between distributions of the adult and larval sea star Asterias amurensis in July was revealed. At the same time, there was no correlation between distributions of larvae and adult individuals of the brittle star Ophiura sarsi and sea urchin Echinocardium cordatum, which are most abundant in the area. The size structure of bottom populations of the brittle stars O. sarsi and Amphiodia fissa in the studied area was assessed. The correlation coefficient between the distribution of young-of-the-year and the population density was 0.47 in O. sarsi and 0.74 in A. fissa respectively, which implied a selective settling of larvae of those species in areas inhabited by adult brittle stars. Recruitment of bottom populations from 1996 spawning was 5% in O. sarsi and 3.3% in A. fissa.     

渔山岛岩礁基质潮间带大型底栖动物优势种生态位

2009年3月至2010年1月期间对渔山岛岩礁基质潮间带大型底栖动物进行定量采样调查,并获得大型底栖动物85种,筛选出全年取样获得优势种30种,隶属5门7纲24科。对获得的30个优势种以Shannon—Wiener指数为基础进行了生态位宽度测定,以Pianka重叠指数为基础进行了生态位重叠值分析,结果显示：潮间带大型底栖动物群落中优势种生态位宽度变化范围为0.18~1.94,值较高的有条纹隔贻贝、覆瓦小蛇螺、角偏顶蛤、日本笠藤壶、鳞笠藤壶和马氏毛粒蟹,均大于1.00,它们对环境适应的能力较强;各优势种的生态位重叠程度不均匀,在0~0.97之间,它们对群落环境资源的利用存在着交叉,潜在的种间竞争压力较大。以密度数据四次开方为基础,利用欧氏距离进行群落物种的系统聚类分析和非度量多维标度排序分析,结果均表明30个优势种可以分为三大类,即狭布种、泛化种和特有种。优势种生态位宽度、优势种之间的生态位重叠值与物种的分布与数量密切相关,生境相似程度高的物种聚类和排序距离就小,大型底栖动物主要通过在资源位上的分布、摄食类群和生活型等的差异缓解竞争。     

Light and moisture levels affect growth and physiological parameters differently in <Emphasis Type="Italic">Faidherbia albida</Emphasis> (Delile) A. Chev. seedlings

The multipurpose tree Faidherbia albida, which is highly recommended for evergreen agriculture, lacks much more recent ecophysiological data. Due to climate change global temperatures are rising; droughts are more common as water is becoming less and less available. How will plants, especially F. albida respond to these changes? We, therefore, set out to understand the effects of varied light and moisture levels. One hundred and thirty-five (135) 120-day-old seedlings were exposed to different light (75, 43 and 16% of full sunlight) and moisture [100, 50 and 25% of field capacity (32.6 ml/100 g of soil)] levels for 12 weeks. There were significant light and water main effects on most growth parameters, below ground biomass (BGB), above ground biomass (AGB), root:shoot ratio (RSR), concentration of chlorophyll b and quantum efficiency of photosystem II of the seedlings. Significant interactions were only recorded on the number of leaves (NL), stem diameter (SD), below ground biomass (BGB) and above ground biomass (AGB). The best water use efficiency, WUE (2661 ml/g), was recorded in the high-light medium-moisture (HLMM) treatment. Our results show that F. albida is affected differently by the different light and moisture levels. There also exists high stress tolerance level. We, therefore, highly recommend it for incorporation into most farming systems even when shading of seedlings constitutes a major intercropping problem.     

Anthesis and pollen dispersal of holcus lanatus L. and Festuca rubra L. in relation to climate factors

Anthesis and pollen dispersal of H. lanatus and F. rubra were related to climate factors during a field investigation on Schiermonnikoog. In both species the anthesis showed a diurnal periodicity and could be connected to air temperature, relative air humidity, and light intensity. In the pollen release of both species no daily periodicity was found. This pollen release appears to be dependent on neither the temperature nor the light intensity. It could be related to only one of the measured climate factors, viz. the relative air humidity. It was discussed that anthesis is an active process based on physiological and ecological properties of the plant, whereas the pollen dispersal is only a mechanical process.     

Spatial variability of epifaunal communities in the North Sea in relation to sampling effort

Benthic epifauna was sampled in six areas from the German Bight towards the Norwegian Sea using a 2-m standard beam trawl. Nine replicates were taken in each area and year from 1999 to 2006. This data set (60–67 replicates per area) was used to describe the spatial variability in local species composition and to assess the effect of increasing sampling effort on species richness and community structure. Our results confirmed the importance of the 50-m depth contour for the separation of benthic fauna in the North Sea. Low species richness, sparse sessile fauna and high abundances of scavenging species such as Asterias rubens, Liocarcinus holsatus, Astropecten irregularis and Ophiura albida were characteristic of the low-water area south of the 50-m contour. Differences in community structure were less conspicuous in deeper waters north of the 50-m contour, but distribution patterns and abundances of single species such as Echinus elegans, Hyalinoecia tubicola, Ophiothrix fragilis, Scaphander lignarius as well as several hermit crabs resulted in well-defined epifaunal communities. One replicate caught 17–28% of the species found in 60–67 samples and was sufficient to separate the community in the German Bight from those in the central and northern North Sea by using multidimensional scaling. Nine replicates sampled a proportion of 53–60% and provided additional information on the spatial variability of community structure in the central and northern North Sea. Our study indicates that appropriate replication enhances the quality of the data and can partly overcome the constraints of sampling with a 2-m beam trawl. This might be helpful for future monitoring programmes.     

A supplement to the grassfly fauna of Japan (Diptera, Chloropidae)

Two new grassfly species, Gampsocera diversicolor closely related to G. tenuisinuosa Kanmiya, 1983 and Conioscinella subdivitis closely related to C. divitis Nartshuk, 1971, are described from Japan. Keys for the new species are given. Oscinisoma ussuriense Nartshuk, 1973, known in Primorskii Territory of Russia and Korea, was found in Japan (Honshu Island) for the first time. The genus Oscinisoma Lioy, 1864 was also first recorded in Japan.