Macroalgae reduces survival of nursery‐reared Acropora corals in the Florida reef tract

Recent declines in coral populations along the Florida reef tract have prompted the establishment of coral restoration programs which raise coral species, such as the threatened Acropora cervicornis, in nurseries ready for outplanting. Large numbers of nursery‐reared coral colonies have been outplanted along the Florida reef tract in recent years, yet few studies have characterized benthic habitats that are considered optimal for colony survival. In 2016, we surveyed 23 A. cervicornis restoration sites, located at six different reefs in the upper Florida Keys. We examined the condition of the outplanted corals and quantified the benthic assemblages adjacent to the outplanted coral colonies. We found that where A. cervicornis survived for more than 1 year, the substrate significantly supported less brown macroalgae of the genus Dictyota than at sites where A. cervicornis had died. Coral survival was highest at sites with less than 15% Dictyota cover. These results suggest that the habitat conditions that supported Dictyota spp. were not conducive to A. cervicornis growth and survival. Restoration practitioners should avoid attaching nursery‐raised corals to substrate with Dictyota spp. cover greater than 15%.     

The impact of Dictyota spp. on Halimeda populations of Conch Reef, Florida Keys

Species of the brown alga Dictyota dominate the reef tract in the Florida Keys. In surveys during summer and fall months between 1994 and 2001, Dictyota occupied as much as 70% of the benthos on Conch Reef. Dictyota spp. were found growing epiphytically on Halimeda tuna, Halimeda opuntia, Lobophora variegata, Galaxura sp., fire coral, hard corals, soft corals, bryozoans and a variety of sponges on Conch Reef. From 1994 to 2001, the percent coverage of Halimeda spp. declined from 15% to 3% on the same reef. In Aug. 1999, 2000 and 2001, on average, 56% of two Halimeda species on Conch Reef had >50% of their thalli covered by Dictyota menstrualis and Dictyota pulchella. To address the impact of Dictyota on Halimeda, short-term growth of unepiphytized and heavily epiphytized (>50% Dictyota cover) H. tuna were compared with unepiphytized H. tuna to which a Dictyota mimic was attached. The number of new segments per plant ranged from 1 to 174 over 9 days. Halimeda thalli with >50% Dicytota cover and thalli covered with Dictyota mimic grew significantly slower than unepiphytized thalli. A second short-term experiment addressed the impact of neighboring Dictyota on the growth and metabolism of unepiphytized H. tuna. Augmenting or clearing epilithic Dictyota around but not in contact with H. tuna had no impact on growth or metabolism of H. tuna. Unepiphytized and heavily epiphytized H. tuna were also collected for studies of metabolism. This work indicated that epiphytic Dictyota negatively impacts metabolic rates of H. tuna in part by shading H. tuna thalli. This negative impact was also in part chemically mediated, as exposure to Dictyota-conditioned water elevated respiration rates in the same manner as seen in the metabolic studies of naturally epiphytized H. tuna.     

Field biology of Halimeda tuna (Bryopsidales, Chlorophyta) across a depth gradient: comparative growth, survivorship, recruitment, and reproduction

Growth, survivorship, recruitment, and reproduction of Halimeda tuna, a dominant green alga in many reef systems of the Florida Keys, were monitored at a shallow back reef (4–7m) and deep reef slope (15–22 m) on Conch Reef. Despite lower light intensities and similar grazing pressures, amphipod infestations, and epiphyte loads at both sites, the deeper site exhibited significantly higher growth rates in summer months over a 4-year period than found for the shallow population, possibly because of higher nutrient levels at depth and photoinhibition of shallow plants. Sexual reproductive events occurred simultaneously across the entire reef, with up to 5% of the population at both sites developing gametangia. New upright axes formed from zygotes, asexual fragmentation, or vegetative runners. Plants appear to have persistent basal stumps that survive harsh environmental conditions, even if upright, photosynthetic axes are removed. Sexual reproduction and smothering by epiphyte overgrowth are hypothesized to be two causes of death for individuals.     

POPULATION STRUCTURE OF A CLONAL GORGONIAN CORAL: THE INTERPLAY BETWEEN CLONAL REPRODUCTION AND DISTURBANCE

Clonality is a common feature of plants and benthic marine organisms. In some cases clonal propagation results in a modest increase in population density, while in other cases dense populations may be generated by the propagation of only a few clones. We analyzed the population structure of the clonal gorgonian Plexaura kuna across several reef habitats with a range of disturbance regimes in the San Blas Islands, Panama, and the Florida Keys, U.S.A. Using multilocus DNA fingerprinting to distinguish clones, we estimated that clones ranged in size from single individuals to 500 colonies. The number of genotypes identified on nine reefs ranged from three to 25. Population density and clonal structure varied markedly among reefs with G_O:G_E ranging from 0.03 to 1.00. On some reefs vegetative reproduction transformed P. kuna from a rare species to the numerically most abundant gorgonian. The effect of clonal propagation on P. kuna population structure was dependent on interactions between fragmentation and the reef environment (disturbance regime, substratum). We present a generalized model relating population structure of clonal species to disturbance and the mode of vegetative propagation. Disturbance promotes colony propagation and skews the size-frequency distribution of clones among P. kuna and many species that propagate via fragmentation. Propagation of these species is promoted by disturbance (disturbance sensitive), and they tend to have clones that are dispersed across local sites. Species that fragment and have dispersed clones, have high genotypic diversity in habitats with low levels of disturbance. Genotypic diversity then decreases at intermediate disturbance and increases again at the highest disturbance levels. Clonal species that do not rely on disturbance for vegetative propagation (disturbance insensitive) generally do not disperse and form aggregated clones. Among these taxa disturbance has a greater affect on individual survival than on propagation. Genotypic diversity is directly related to the level of disturbance until very high levels of disturbance, at which time genotypic diversity declines.     

Asexual propagation in the coral reef macroalga Halimeda (Chlorophyta, Bryopsidales): production, dispersal and attachment of small fragments

Siphonous, green macroalgae of the genus Halimeda are ubiquitous and ecologically important in tropical and subtropical marine environments. It has been hypothesized that the abundance of Halimeda on coral reefs is in part due to the ability of this genus to propagate asexually via vegetative fragmentation. However, vegetative fragmentation has only been documented for H. discoidea in a laboratory setting. To test the hypothesis that vegetative fragmentation contributes to field populations of Halimeda, we examined three aspects of fragmentation by H. tuna (Ellis and Solander) Lamouroux, H. opuntia (Linneaus) Lamouroux and H. goreaui Taylor on Conch Reef in the Florida Keys: (1) short-term (8 days) and long-term (14 weeks) fragment survival and rhizoid production in the laboratory and field (7 and 21 m), (2) size of the fragment pool and (3) influences of herbivory and water motion on production and dispersal of fragments. Although morphologically similar to H. discoidea, only a small percentage of H. tuna fragments survived. Fragments of H. opuntia and H. goreaui were more robust, and survival and rhizoid production were positively correlated with size in short-term trials. In 14-week field trials, one-third or fewer fragments of any species survived at 7 m, potentially because fragments were covered by large amounts of sediment. Survivors included some buried, seemingly dead individuals that turned green when exposed to light, highlighting the remarkable ability of this genus to survive disturbances. There was much less sediment accumulation at 21 m, where more fragments survived. Most (93%) eight-segment fragments of H. opuntia produced attachment rhizoids by the end of the 14-week trial. Overall, a range of 4.7-9.4 fragments of Halimeda m⁻² day⁻¹ were found on Conch Reef; most fragments were generated by H. goreaui. Fish bite marks were evident on 75-85% of the individuals of H. tuna and the number of bites per thallus ranged from 1 to 23. Herbivorous reef fish commonly fed on all three species of Halimeda. Some fish consumed the biomass, while others rejected most bites. For example, 83% of bites were rejected by the blue-striped grunt. Dispersal distances for rejected bites ranged from 0 to 31 m. Water motion was also responsible for fragment dispersal; experimentally produced fragments moved up to 48 cm day⁻¹. Results presented here suggest that asexual propagation of fragments of Halimeda is an important component of the life-history of this genus and vegetative fragmentation contributes to the abundance of this genus on coral reefs.     

Small-scale demographic variability of the biocolor damselfish, <Emphasis Type="Italic">Stegastes partitus</Emphasis>, in the Florida Keys USA

The demographic responses of reef fish to their environment can be complex and in many cases, quite strong. Growth, mortality, longevity, and even reproductive effort have been demonstrated to vary for the same species of reef fish over scales of 100s to 1,000s of kilometers due to physiological and ecological interactions. Though few studies have explicitly documented it, this sort of habitat-mediated demography can also exist at very local scales. Here we present the results of a 2-year study of the bicolor damselfish, Stegastes partitus, in the Florida Keys, USA. We measured density and distribution, calculated key demographic rates (growth, survival, and fecundity), and characterized the environment (resident fish assemblage, substrate type and complexity, and food availability) of populations living in two adjacent but different habitats, the continuous fore reef and patchy back reef. Fish on the fore reef had an elevated growth rate and asymptotic size, increased mortality, and higher fecundity than fish on the back reef. We identified four potential causative mechanisms for these differences: food availability; competition; intraspecific density-dependent effects; and predation risk. Our data did not support an effect of either food availability or intraspecific density-dependence, but rather suggested that demographic responses are affected by both competition and predation risk.     

Species‐specific responses to climate change and community composition determine future calcification rates of Florida Keys reefs

Anthropogenic climate change compromises reef growth as a result of increasing temperatures and ocean acidification. Scleractinian corals vary in their sensitivity to these variables, suggesting species composition will influence how reef communities respond to future climate change. Because data are lacking for many species, most studies that model future reef growth rely on uniform scleractinian calcification sensitivities to temperature and ocean acidification. To address this knowledge gap, calcification of twelve common and understudied Caribbean coral species was measured for two months under crossed temperatures (27, 30.3 °C) and CO₂ partial pressures (pCO₂) (400, 900, 1300 μatm). Mixed‐effects models of calcification for each species were then used to project community‐level scleractinian calcification using Florida Keys reef composition data and IPCC AR5 ensemble climate model data. Three of the four most abundant species, Orbicella faveolata, Montastraea cavernosa, and Porites astreoides, had negative calcification responses to both elevated temperature and pCO₂. In the business‐as‐usual CO₂ emissions scenario, reefs with high abundances of these species had projected end‐of‐century declines in scleractinian calcification of >50% relative to present‐day rates. Siderastrea siderea, the other most common species, was insensitive to both temperature and pCO₂ within the levels tested here. Reefs dominated by this species had the most stable end‐of‐century growth. Under more optimistic scenarios of reduced CO₂ emissions, calcification rates throughout the Florida Keys declined <20% by 2100. Under the most extreme emissions scenario, projected declines were highly variable among reefs, ranging 10–100%. Without considering bleaching, reef growth will likely decline on most reefs, especially where resistant species like S. siderea are not already dominant. This study demonstrates how species composition influences reef community responses to climate change and how reduced CO₂ emissions can limit future declines in reef calcification.     

Microbial signatures of protected and impacted Northern Caribbean reefs: changes from Cuba to the Florida Keys

There are a few baseline reef-systems available for understanding the microbiology of healthy coral reefs and their surrounding seawater. Here, we examined the seawater microbial ecology of 25 Northern Caribbean reefs varying in human impact and protection in Cuba and the Florida Keys, USA, by measuring nutrient concentrations, microbial abundances, and respiration rates as well as sequencing bacterial and archaeal amplicons and community functional genes. Overall, seawater microbial composition and biogeochemistry were influenced by reef location and hydrogeography. Seawater from the highly protected ‘crown jewel’ offshore reefs in Jardines de la Reina, Cuba had low concentrations of nutrients and organic carbon, abundant Prochlorococcus, and high microbial community alpha diversity. Seawater from the less protected system of Los Canarreos, Cuba had elevated microbial community beta-diversity whereas waters from the most impacted nearshore reefs in the Florida Keys contained high organic carbon and nitrogen concentrations and potential microbial functions characteristic of microbialized reefs. Each reef system had distinct microbial signatures and within this context, we propose that the protection and offshore nature of Jardines de la Reina may preserve the oligotrophic paradigm and the metabolic dependence of the community on primary production by picocyanobacteria.     

The Barrier Reef sediment apron: Tobacco Reef,Belize

Sedimentological and biological surveys of the back-reef sediment apron of Tobacco Reef, a continuous segment of the Belizean Barrier Reef, reveal five distinct biogeological zones: (1) coralline-coral-Dictyota pavement, (2) Turbinaria-Sargassum rubble, (3) Laurencia-Acanthophora sand and gravel, (4) bare sand and 95 Thalassia sand. These zones parallel the entire 9-km reef. The distribution of these zones is related to the spatial patterns of fish herbivory, the size of bottom sediments, and the stability of the substrate. Sedimentological and hydrodynamic studies indicate that most of the sediments in this area are transported from the reef crest and fore reef during periods of storm or hurricane activity and that their size distribution is largely the result of differential transport by high bottom-water velocities during those periods.     

Comparison between community structures of fishes in <Emphasis Type="Italic">Enhalus acoroides</Emphasis>- and <Emphasis Type="Italic">Thalassia hemprichii</Emphasis>-dominated seagrass beds on fringing coral reefs in the Ryukyu Islands,Japan

To clarify differences in community structures and habitat utilization patterns of fishes in Enhalus acoroides- and Thalassia hemprichii-dominated seagrass beds on fringing coral reefs, visual censuses were conducted at Iriomote and Ishigaki islands, southern Japan. The numbers of fish species and individuals were significantly higher in the E. acoroides bed than in the T. hemprichii bed, although the 15 most dominant fishes in each seagrass bed were similar. Cluster and ordination analyses based on the number of individuals of each fish species also demonstrated that fish community structures were similar in the two seagrass beds. Species and individual numbers of coral reef fishes which utilized the seagrass beds numbered less than about 15% of whole coral reef fish numbers, although they comprised about half of the seagrass bed fishes. Of the 15 most dominant species, 5 occurred only in the two seagrass beds, including seagrass feeders. Ten other species were reef species, their habitat utilization patterns not differing greatly between the two seagrass beds. Some reef species, such as Lethrinus atkinsoni and L. obsoletus, showed ontogenetic habitat shifts with growth, from the seagrass beds to the coral areas. These results indicate that community structures and habitat utilization patterns of fishes were similar between E. acoroides- and T. hemprichii-dominated seagrass beds, whereas many coral reef fishes hardly utilized the seagrass beds.     

Irradiance and nutrient limitation of Dicytota spp. populations on Conch Reef, Florida Keys, USA

The photosynthetic performance, pigmentation and response to nutrient enrichment of a Dictyota community were studied over a 32 m depth gradient on Conch Reef, Florida Keys, USA. Dictyota spp. was the dominant space occupier on Conch Reef. During summer months from 1994 to 2001, mean percent cover was 43% at 7 and 21 m depths. Percent cover of Dictyota spp. was markedly lower at 32 m relative to shallower sites. The metabolism of Dictyota menstrualis and Dictyota pulchella were negatively impacted by attenuation of irradiance with increased depth such that ETR_max and P/R ratio decreased by 85% and 47%, respectively in samples from 7 to 32 m. Decreased cover of Dicytota spp. at 32 m relative to shallower sites may be the result of the inability of this species complex to acclimate to low irradiance levels as indicated by a lack of change in α and photosynthetic pigment content with increased depth.The response of D. menstrualis populations on Conch Reef to nutrient enrichment was variable. During August 2000, a natural enrichment experiment was conducted as D. menstrualis photosynthetic performance was surveyed both during and for days after a period of cool, nutrient-rich internal tidal bores bathed the 21 m site. No changes in in situ photosynthetic performance were observed either during or for 2 to 4 days after this natural event suggesting no nutrient limitation. In August 2001, a manipulative nutrient enrichment experiment was conducted with D. menstrualis from 7, 21 and 32 m. Increases in Φ_II were found in individuals exposed to nutrient enrichment from all depths, indicating at that time D. menstrualis was nutrient-limited on Conch Reef. Variation in the physiological response to nutrient enrichment may be the result of the frequency of internal tidal bores on Conch Reef in the months prior to our experiments. Variation in the responses by Dictyota spp. to irradiance and nutrient enrichment suggests that long-term monitoring over relevant temporal and spatial scales is necessary to accurately characterize limits on productivity and spread of this weedy species assemblage.     

Sediment retention in encrusting Palythoa spp.—a biological twist to a geological process

 Carpet sea anemones of the genus Palythoa are common inhabitants of reef crest environments in the Florida Keys reef tract. Through a unique assimilation mechanism, Palythoa spp. entomb carbonate sediment within their tissues. The amount of sediment assimilated is significant, averaging almost 45% of wet tissue weight. Palythoa spp. assimilate all available minerals on the reef. Aragonite, magnesium calcite, calcite and minor quantities of siliciclastic components are all assimilated in proportions comparable to their content in adjacent sediment sinks. There is also no preference in terms of skeletal composition; coral grit, coralline red algae, Halimeda and other allochems are all equally assimilated into Palythoa spp. tissue. The only preference is particle size. Sediment extracted from tissue samples is generally ?125 μm in size, far finer than ambient sediment found adjacent to Palythoa spp. colonies (predominantly >500 μm). Much of the finest sediment extracted from Palythoa spp. tissue is composed of elongated crystal aggregates of aragonite. These particles appear to have been produced in situ through biologically influenced mineralization. Aggregates nucleated on exogenous sediment and attained their elongated form as assimilation proceeded. When Palythoa spp. colonies die, the assimilated sediment and the crystal aggregates are released back into the reef environment. The eventual fate of this material has yet to be determined. Accepted: 5 July 1996     

Anthropogenic Stressors,Inter-Specific Competition and ENSO Effects on a Mauritian Coral Reef

Much of the western Indian Ocean suffered widespread loss of live coral in 1998 and interest is now focussed on the indirect effects of this coral loss on other components of the ecosystem, in particular fishes. However, it is just as important to identify changes in fish assemblages at locations that did not suffer coral mortality to understand local versus regional drivers. We surveyed benthic and fish communities on a reef flat in Mauritius five times between 1994 and 2005. The design allowed for comparison through time, along the coast and between inshore and offshore reef locations. The benthic community demonstrates a clear trend along the coast, likely in response to a dredged water ski lane, but little change through time. Branching Acropora colonies dominate much of the live coral and best explain patterns in the fish assemblage (P < 0.01). Few changes in overall fish species richness through time were identified, and observed changes were within fishery target families rather than species reliant on live coral. Departure from expected levels of taxonomic distinctness suggests degradation in the community associated with the dredged ski lane. Non-metric multi-dimensional scaling of the fish assemblage demonstrates a similar pattern to that seen in the benthos; greater differences along the coast (Global R = 0.34) than through time (Global R = 0.17) and no trend between reef positions. SIMPER analysis identified two species of Stegastes as the main drivers of trends in the MDS plot and the most dominant of these, S. lividus, appears to be reducing species richness of the remaining fish community. The study highlights Mauritius as a regional refugia of thermally-sensitive corals and specialised fish, suggesting a need for careful management.     

Cold-water event of January 2010 results in catastrophic benthic mortality on patch reefs in the Florida Keys

The Florida Keys are periodically exposed to extreme cold-water events that can have pronounced effects on coral reef community structure. In January 2010, the Florida Keys experienced one of the coldest 12-day periods on record, during which water temperatures decreased below the lethal limit for many tropical reef taxa for several consecutive days. This study provides a quantitative assessment of the scleractinian mortality and acute changes to benthic cover at four patch reefs in the middle and upper Keys that coincided with this cold-water event. Significant decreases in benthic cover of scleractinian corals, gorgonians, sponges, and macroalgae were observed between summer 2009 and February 2010. Gorgonian cover declined from 25.6 ± 4.6% (mean ± SE) to 13.3 ± 2.7%, scleractinian cover from 17.6 ± 1.4% to 10.7 ± 0.9%, macroalgal cover from 8.2 ± 5.2% to 0.7 ± 0.3%, and sponge cover from 3.8 ± 1.4% to 2.3 ± 1.2%. Scleractinian mortality varied across sites depending upon the duration of lethal temperatures and the community composition. Montastraea annularis complex cover was reduced from 4.4 ± 2.4% to 0.6 ± 0.2%, and 93% of all colonies surveyed suffered complete or partial mortality. Complete or partial mortality was also observed in >50% of all Porites astreoides and Montastraea cavernosa colonies and resulted in a significant reduction in cover. When compared with historical accounts of cold-water-induced mortality, our results suggest that the 2010 winter mortality was one of the most severe on record. The level of coral mortality on patch reefs is of particular concern because corals in these habitats had previously demonstrated resistance against stressors (e.g., disease and warm-water bleaching) that had negatively affected corals in other habitats in the Florida Keys during recent decades.     

Fitness consequences of habitat variability,trophic position,and energy allocation across the depth distribution of a coral-reef fish

Environmental clines such as latitude and depth that limit species’ distributions may be associated with gradients in habitat suitability that can affect the fitness of an organism. With the global loss of shallow-water photosynthetic coral reefs, mesophotic coral ecosystems (~30–150 m) may be buffered from some environmental stressors, thereby serving as refuges for a range of organisms including mobile obligate reef dwellers. Yet habitat suitability may be diminished at the depth boundary of photosynthetic coral reefs. We assessed the suitability of coral-reef habitats across the majority of the depth distribution of a common demersal reef fish (Stegastes partitus) ranging from shallow shelf (SS, <10 m) and deep shelf (DS, 20–30 m) habitats in the Florida Keys to mesophotic depths (MP, 60–70 m) at Pulley Ridge on the west Florida Shelf. Diet, behavior, and potential energetic trade-offs differed across study sites, but did not always have a monotonic relationship with depth, suggesting that some drivers of habitat suitability are decoupled from depth and may be linked with geographic location or the local environment. Feeding and diet composition differed among depths with the highest consumption of annelids, lowest ingestion of appendicularians, and the lowest gut fullness in DS habitats where predator densities were highest and fish exhibited risk-averse behavior that may restrict foraging. Fish in MP environments had a broader diet niche, higher trophic position, and higher muscle C:N ratios compared to shallower environments. High C:N ratios suggest increased tissue lipid content in fish in MP habitats that coincided with higher investment in reproduction based on gonado-somatic index. These results suggest that peripheral MP reefs are suitable habitats for demersal reef fish and may be important refuges for organisms common on declining shallow coral reefs.

     

<Emphasis Type="Italic">Lysmata rafa</Emphasis>, a new species of peppermint shrimp (Crustacea,Caridea, Hippolytidae) from the subtropical western Atlantic

Lysmata rafa n. sp. is described from freshly collected specimens from the Keys West Lakes, Florida Keys, and from a museum specimen collected at Bear Cut, Biscayne Bay, Florida. The new species is morphologically most similar to the western Atlantic Lysmata rathbunae Chace, 1970 and the eastern Pacific Lysmata gracilirostris Wicksten, 2000, but can be distinguished from them by the number of carpal segments in the second pereiopod; the length and dentition of the rostrum; the shape and number of spines on the dactylus of the third to fifth pereiopods; and the absence of a tooth on the pterygostomial margin of the carapace. Despite being a shallow-water species, L. rafa n. sp. has extremely elongate walking legs and third maxilliped that are more typical to deep-water or cave dwelling carideans.     

The influence of habitat on the size distribution of groupers in the upper Florida Keys

Synopsis The influence of habitat on the size distribution of groupers was examined at sites in the middle and upper Florida Keys. Transects were used to quantify the size distribution of groupers at study sites. There were significant differences in the size distribution of groupers within and among reef community types related to differences in species composition and patch reef size. Groupers with a giant life-history style (Sullivan & de Garine 1994) were more abundant, but smaller, on inshore patch reefs than offshore reef community types. However, grouper species with a dwarf life-history style (Sullivan & de Garine 1994) showed an opposite pattern with a lower abundance, but larger size, inshore than offshore. The length category of groupers constituting the majority of individuals observed on patch reefs was inversely related to reef size. Graysby Epinephelus cruentatus were shown to recruit to deeper (15–20 m), low-relief habitats offshore. Several factors influenced the size distribution of groupers in the study sites including habitat type, spear-fishing, competition, predation, and recruitment.     

Geographic differences in vertical connectivity in the Caribbean coral Montastraea cavernosa despite high levels of horizontal connectivity at shallow depths

The deep reef refugia hypothesis proposes that deep reefs can act as local recruitment sources for shallow reefs following disturbance. To test this hypothesis, nine polymorphic DNA microsatellite loci were developed and used to assess vertical connectivity in 583 coral colonies of the Caribbean depth‐generalist coral Montastraea cavernosa. Samples were collected from three depth zones (≤10, 15–20 and ≥25 m) at sites in Florida (within the Upper Keys, Lower Keys and Dry Tortugas), Bermuda, and the U.S. Virgin Islands. Migration rates were estimated to determine the probability of coral larval migration from shallow to deep and from deep to shallow. Finally, algal symbiont (Symbiodinium spp.) diversity and distribution were assessed in a subset of corals to test whether symbiont depth zonation might indicate limited vertical connectivity. Overall, analyses revealed significant genetic differentiation by depth in Florida, but not in Bermuda or the U.S. Virgin Islands, despite high levels of horizontal connectivity between these geographic locations at shallow depths. Within Florida, greater vertical connectivity was observed in the Dry Tortugas compared to the Lower or Upper Keys. However, at all sites, and regardless of the extent of vertical connectivity, migration occurred asymmetrically, with greater likelihood of migration from shallow to intermediate/deep habitats. Finally, most colonies hosted a single Symbiodinium type (C3), ruling out symbiont depth zonation of the dominant symbiont type as a structuring factor. Together, these findings suggest that the potential for shallow reefs to recover from deep‐water refugia in M. cavernosa is location‐specific, varying among and within geographic locations likely as a consequence of local hydrology.     

Spatial and temporal distributions of epiphytic diatoms growing on Thalassia testudinum Banks ex König: relationships to water quality

The spatial and temporal distributions of the epiphytic diatom flora on Thalassia testudinum was described within the Florida Bay estuary and at one Atlantic site east of the Florida Keys over a 1-year period. Species of the genus Mastogloia dominated the epiphytic diatom flora (82 out of 332 total species). Nonmetric Multidimensional Scaling (NMDS) and Analysis of Similarity (ANOSIM) revealed four distinct spatial assemblages and two temporal assemblages. Eastern and western Florida Bay assemblages were identified within the estuary. The eastern diatom assemblage was characterized by high relative abundances of Brachysira aponina and Nitzschia liebetruthii, while the western assemblage was characterized by the abundance of Reimerothrix floridensis, particularly during summer. Two diverse and distinct marine assemblages, one located in the Gulf of Mexico along the western edge of Florida Bay and the other behind the Florida reef tract in the Atlantic Ocean, were also identified. Analysis of the spatial distribution of diatoms and water quality characteristics within Florida Bay suggest that these assemblages may be structured by salinity and nutrient availability, particularly P. The Gulf of Mexico and the western Florida Bay assemblages were associated with higher water column salinities and TP concentrations and lower DIN concentrations and TN:TP ratios relative to the eastern Florida Bay assemblage. The temporal variation in diatom assemblages was associated with water temperature, though temporal indicator species were few relative to the number of spatial indicators. Electronic supplementary material Electronic supplementary material is available for this article at and accessible for authorised users.