How strong is natural selection?

The strength of selection in nature has long been a controversial subject, partly because there were few quantitative measurements of phenotypic selection available until recently. In a new paper, Kingsolver and colleagues reviewed 63 studies and found that the median standardized directional selection gradient (a measure of the strength of phenotypic selection) was 0.16. Whether this means selection in nature is strong or weak depends both on one's point of view and on the error in selection estimates.     

How strong is the mutagenicity of recombination in mammals?

It is commonly believed that a high recombination rate such as that in a pseudoautosomal region (PAR) greatly increases the mutation rate because a 170-fold increase was estimated for the mouse PAR region. However, sequencing PAR and non-PAR introns of the Fxy gene in four Mus taxa, we found an increase of only twofold to fivefold. Furthermore, analyses of sequence data from human and orangutan PAR and X-linked regions and from autosomal regions showed a weak effect of recombination on mutation rate (a slope of less than 0.2% per cM/Mb), although a much stronger effect on GC content (1% to 2% per cM/Mb). Because typical recombination rates in mammals are much lower than those in PARs, the mutagenicity of recombination is weak or, at best, moderate, although its effect on GC% is much stronger. In addition, contrary to a previous study, we found no Fxy duplicate in Mus spretus.     

Does irrigation affect leaf phenology in deciduous and evergreen trees of the savannas of northern Australia?

Abstract Soil moisture was augmented experimentally during two successive dry seasons and the intervening wet season in a humid tropical savanna in Darwin, northern Australia. Leaf phenology was monitored in four common tree species Termmalia ferdinandiana and Planchonia careya (both deciduous species), and Eucalyptus miniata and Eucalyptus tetrodonta (both evergreen species). Irrigation produced consistently significant effects in only T. ferdinandiana. In this species leaf-flush was significantly earlier, canopy decline and leaf-fall were significantly later and the attainment of full canopy was earlier in irrigated compared with non-irrigated trees. Litterfall, and the seasonal patterns of contraction and expansion of stems (a measure of stem water status or storage) were not significantly affected by irrigation in any species. Leaf longevity in the deciduous species was 6–8 months; some eucalypt leaves lived for approximately 1 year, but none lived longer than 18 months. Irrigation had relatively little effect on leaf longevity. While variation in soil moisture is a potentially important cue to both leaf-fall and leaf-flush, stem water status and climatic factors such as vapour pressure deficit may also be important climatic cues to phenological behaviour.     

Cell and leaf size plasticity in Arabidopsis: what is the role of endoreduplication?

Leaf area expansion is affected by environmental conditions because of differences in cell number and/or cell size. Increases in the DNA content (ploidy) of a cell by endoreduplication are related to its size. The aim of this work was to determine how cell ploidy interacts with the regulation of cell size and with leaf area expansion. The approach used was to grow Arabidopsis thaliana plants performing increased or decreased rounds of endoreduplication under shading and water deficit. The shading and water deficit treatments reduced final leaf area and cell number; however, cell area was increased and decreased, respectively. These differences in cell size were unrelated to alterations of the endocycle, which was reduced by these treatments. The genetic modification of the extent of endoreduplication altered leaf growth responses to shading and water deficit. An increase in the extent of endoreduplication in a leaf rendered it more sensitive to the shade treatment but less sensitive to water deficit conditions. The link between the control of whole organ and individual cell expansion under different environmental conditions was demonstrated by the correlation between the plasticity of cell size and the changes in the duration of leaf expansion.     

Temporal pollen pattern in temperate trees: expedience or fate?

European forests are populated with a variety of wind‐pollinated tree species. Their pollen productivity and spatio‐temporal pattern are largely unknown. Long‐term data (17 years) collected at 22 sites across Austria were presented and the pollen production of 12 tree genera was analysed. We ranked the tree genera according to their pollen productivity taking actual tree abundances of the Austrian Forestry Inventory into account. The productivity varied strongly among tree genera with a maximum for Betula. Pollen production in Larix, Abies and Picea amounted to approximately 1/20, while in increasing order Salix, Quercus, Alnus, Populus and Fraxinus produced approximately 1/3 to 1/4 of the respective Betula estimate. In general, pollen quantity in broadleaves was higher than in conifers. We analysed the temporal pollen production pattern by means of hierarchical cluster analysis and identified three major groups: [(Fagus, Larix, Picea, Abies), (Alnus, Betula, Fraxinus)], [Carpinus],[Populus, Salix, Pinus, Quercus]. Distance matrices based on life‐history traits as well as molecular phylogeny were also constructed; they correlated significantly with each other by means of Mantel‐tests. However, there was no significant relationship between the distances on temporal pollen production with the other matrices. Intermittent or idiosyncratic pollen production was studied by means of deviation from expected means, skewness and spindle diagrams. We proposed that Fagus, Carpinus, Larix, Picea and Abies belong to ‘masting pollen producers’, while the remaining genera idiosyncratically produced pollen over the monitored period. Moreover we correlated the distance matrix of pollen production for each tree genus at each sampling site with respective ‘ecological distance matrices’ based on aerial and altitudinal distance among sites. Significant correlations were detected for tree genera (Fagus, Larix, Picea) which were also prone to pollen masting, thus indicating a Moran effect.     

Does canopy position affect wood specific gravity in temperate forest trees?

The radial increases in wood specific gravity known in many tree species have been interpreted as providing mechanical support in response to the stresses associated with wind loading. This interpretation leads to the hypothesis that individuals reaching the canopy should (1) be more likely to have radial increases in specific gravity and (2) exhibit greater increases than individuals in the subcanopy. Wood specific gravity was determined for three species of forest trees (Acer rubrum, Fagus grandifolia and Tsuga canadensis) growing in central Massachusetts, USA. Acer rubrum shows radial increases in specific gravity, but these increases are not more pronounced in canopy trees; the other two species show a pattern of radial decreases. The degree of radial increase or decrease is influenced by tree height and diameter. Of the dominant tree species for which we have data, A. rubrum, Betula papyrifera and Pinus strobus show radial increases in specific gravity, whereas F. grandifolia, T. canadensis and Quercus rubra show decreases. The occurrence of radial increases in B. papyrifera and P. strobus, which are often canopy emergents, suggests that it is overall adaptive strategy that is important rather than position (canopy vs. subcanopy) of any individual tree. It is suggested that radial increases in specific gravity are associated with early-successional status or characteristics and decreases with late-successional status or persistence in mature forest.     

May seed banks contribute to vegetation restoration on paths in temperate deciduous forest?

Forest paths are characterised by a zonation in vegetation composition as a result of gradients in abiotical conditions and continued recreational impact. Little is known about how much seed bank composition is affected by recreation and the existing path structure. As it is difficult to assess the contribution of seed banks to vegetation restoration, this study imparts relevant knowledge to restore vegetation on paths which are closed for recreational use. We surveyed seed bank and field layer vegetation composition in transects across path ecotones in deciduous forest. Analysis concentrated on seed bank characteristics and similarities of the seed bank and field layer vegetation in terms of ecological and seed size groups. A total of 74 species and 9,815 seedlings germinated out of the seed bank samples. The total seed density does not differ between path zones, but significant differences exist in the depth distribution and composition of the seed bank throughout transects. There is a large discrepancy between the composition of the seed bank and the vegetation. Small seeded species of disturbed environments dominate in each path zone. Typical forest species dominate in the vegetation while their contribution to the seed bank is low. Only with reference to the proportion of species of forest edges and clearings, the seed bank and vegetation do not differ significantly. Similarity between the seed bank on the path centre and the vegetation in the respective path zones decreases towards the undisturbed forest vegetation. Some competitive species like Urtica dioica and Lythrum salicaria are excessively represented in the seed bank and efficiently may obstruct further visitor use. However, these early successional species may not contribute to the conservation values of forests. Therefore management should carefully consider alternative amendments (e.g. soil scarification and seeding) to stimulate vegetation restoration.     

Does insect folivory vary with latitude among temperate deciduous forests?

There is a widespread belief that warmer climate forests suffer more folivory, as a proportion of leaf area, than cooler climate forests. However, there is a need for closely standardized studies to test this assumption. In this study, we estimated total folivory as percentage area damaged in freshly fallen, undecayed autumn leaves from the forest floor during the lifetime of deciduous tree leaves, using scanner-linked software. Over a period of 2 years, 154 samples were taken at 96 forested localities in eastern North America, spanning 17° of latitude. In terms of percentage area damage per leaf, the results in both years sampled suggest that there is significantly more damage in warmer, lower latitude areas of eastern North America. The decreasing folivory rate is higher in northern than in southern regions. The observations of a latitudinal trend may suggest that ‘biotic’ interaction is indeed more important in warmer temperate climates compared to cool temperate climates.     

How do Araucaria angustifolia trees grow in overstocked stands?

The objective of this study was to evaluate growth along the stem of Araucaria angustifolia (Bertol.) Kuntze trees competing in overstocked stands, in order to identify periods when growth and trunk shape are differentiated during the trees' lifespan. The research was carried out in a planted forest of Araucaria angustifolia established in 1946 in the Açungui National Forest in Campo Largo, Paraná, Brazil, when these trees were 65 years old. One thinning was recorded, at some time between 1970 and 1980. Forty-six trees were selected and divided into three development classes (DC) at 65 years of age; these classes considered diameter at 1.30 m (breast height, dbh) with a range of 20 cm (from 10 cm to 70 cm). In addition to dbh, total tree height, and crown height and diameter were measured in the field. From each tree, 14 disks were removed to analyze growth rings and confirm the age of the stand. Some trees in the smallest DC (10 ≤ dbh < 30 cm) were the product of natural regeneration (younger trees that grew after the initial planting). In 63% of the trees, at least one growth ring was missing at breast height. Missing rings at breast height were more common in trees with smaller dbh and crown diameters. The need for more growing space was observed at different periods during the studied lifespan of the trees from three DCs. It resulted in changes in stems shape from conical to cylindrical. Different growth patterns could be observed during the lives of some trees as they outgrew their competition.     

How competitive is the ‘pioneerclimax’ tree species Nothofagus alpina in pristine temperate forests#br#of Chile?

AimsNothofagusspecies are constitutive elements of the temperate forests along the Southern Andes Mountains. The deciduousNothofagus alpinais a fast-growing, but long-lived opportunistic pioneer species (‘pioneer-climax species’) and co-occurs with the evergreenN. dombeyi. We tested whetherN. alpinais competitively superior toN. dombeyiin mature stands and whether intra-specific competition inN. alpinais stronger than inter-specific competition withN. dombeyi.     

Fleshy fruit characteristics in a temperate deciduous forest of Japan: how unique are they?

This study investigated the fleshy fruit characteristics of 28 woody species in a Japanese temperate forest where large sedentary seed-dispersing mammals are present. We tested whether the findings in previous studies in temperate forests of Europe and North America are universal or not. Results have suggested that fruits of all species were eaten both by birds and mammals except for four species with larger fruits, which were eaten only by mammals. A gradient was found from a syndrome characterized by small, oily, and large-seeded fruits to a syndrome characterized by large, succulent, non-oily, and small-seeded fruits. The sizes and colors of the fruits were not conspicuously different from previous findings in Europe and North America. On the other hand, nitrogen and lipids in the fleshy part did not show seasonally increasing trends, or even seasonally decreasing trends in terms of dry weight. This result, suggesting the absence of community-level adaptation of fruit traits to migratory bird dispersers, contrasted with findings in Europe and North America. Large sedentary arboreal or tree-climbing mammals may have a greater effect on the evolution of fruit-disperser relations than opportunistic migratory birds.     

How good are deep phylogenetic trees?

Great interest is given to species emerging early in phylogenetic reconstruction because they are often assumed to represent an ancestor. Recent studies indicate, however, that species branching deep in molecular trees are often fast-evolving ones, misplaced because of the long-branch artefact. The detection of genuinely deep-branching organisms remains an elusive task.     

How do herbivorous insects respond to drought stress in trees?

Increased frequency and severity of drought, as a result of climate change, is expected to drive critical changes in plant–insect interactions that may elevate rates of tree mortality. The mechanisms that link water stress in plants to insect performance are not well understood. Here, we build on previous reviews and develop a framework that incorporates the severity and longevity of drought and captures the plant physiological adjustments that follow moderate and severe drought. Using this framework, we investigate in greater depth how insect performance responds to increasing drought severity for: (i) different feeding guilds; (ii) flush feeders and senescence feeders; (iii) specialist and generalist insect herbivores; and (iv) temperate versus tropical forest communities. We outline how intermittent and moderate drought can result in increases of carbon‐based and nitrogen‐based chemical defences, whereas long and severe drought events can result in decreases in plant secondary defence compounds. We predict that different herbivore feeding guilds will show different but predictable responses to drought events, with most feeding guilds being negatively affected by water stress, with the exception of wood borers and bark beetles during severe drought and sap‐sucking insects and leaf miners during moderate and intermittent drought. Time of feeding and host specificity are important considerations. Some insects, regardless of feeding guild, prefer to feed on younger tissues from leaf flush, whereas others are adapted to feed on senescing tissues of severely stressed trees. We argue that moderate water stress could benefit specialist insect herbivores, while generalists might prefer severe drought conditions. Current evidence suggests that insect outbreaks are shorter and more spatially restricted in tropical than in temperate forests. We suggest that future research on the impact of drought on insect communities should include (i) assessing how drought‐induced changes in various plant traits, such as secondary compound concentrations and leaf water potential, affect herbivores; (ii) food web implications for other insects and those that feed on them; and (iii) interactions between the effects on insects of increasing drought and other forms of environmental change including rising temperatures and CO₂ levels. There is a need for larger, temperate and tropical forest‐scale drought experiments to look at herbivorous insect responses and their role in tree death.     

How strong is the edge effect in the adsorption of anticancer drugs on a graphene cluster?

The adsorption of nucleobase-analog anticancer drugs (fluorouracil, thioguanine, and mercaptopurine) on a graphene flake (C₅₄H₁₈) was investigated by shifting the site at which adsorption occurs from one end of the sheet to the other end. The counterpoise-corrected M06-2X/cc-pVDZ binding energies revealed that the binding stability decreases in the sequence thioguanine?>?mercaptopurine?>?fluorouracil. We found that adsorption near the middle of the sheet is more favorable than adsorption near the edge due to the edge effect. This edge effect is stronger for the adsorption of thioguanine or mercaptopurine than for fluorouracil adsorption. However, the edge effect reduces the binding energy of the drug to the flake by only a small amount, <5 kcal/mol, depending on the adsorption site and the alignment of the drug at this site.     

How strong is the current carbon sequestration of an Atlantic blanket bog?

Although northern peatlands cover only 3% of the land surface, their thick peat deposits contain an estimated one‐third of the world's soil organic carbon (SOC). Under a changing climate the potential of peatlands to continue sequestering carbon is unknown. This paper presents an analysis of 6 years of total carbon balance of an almost intact Atlantic blanket bog in Glencar, County Kerry, Ireland. The three components of the measured carbon balance were: the land‐atmosphere fluxes of carbon dioxide (CO₂) and methane (CH₄) and the flux of dissolved organic carbon (DOC) exported in a stream draining the peatland. The 6 years C balance was computed from 6 years (2003–2008) of measurements of meteorological and eddy‐covariance CO₂ fluxes, periodic chamber measurements of CH₄ fluxes over 3.5 years, and 2 years of continuous DOC flux measurements. Over the 6 years, the mean annual carbon was ?29.7±30.6 (±1 SD) g C m^?2 yr^?1 with its components as follows: carbon in CO₂ was a sink of ?47.8±30.0 g C m^?2 yr^?1; carbon in CH₄ was a source of 4.1±0.5 g C m^?2 yr^?1 and the carbon exported as stream DOC was a source of 14.0±1.6 g C m^?2 yr^?1. For 2 out of the 6 years, the site was a source of carbon with the sum of CH₄ and DOC flux exceeding the carbon sequestered as CO₂. The average C balance for the 6 years corresponds to an average annual growth rate of the peatland surface of 1.3 mm yr^?1.     

How strong are side chain interactions in the folding intermediate?

Influence of 12 nonpolar amino acids residues from the hydrophobic core of apomyoglobin on stability of its native state and folding intermediate was studied. Six of the selected residues are from the A, G and H helices; these are conserved in structure of the globin family, although nonfunctional, that is, not involved in heme binding. The rest are nonconserved hydrophobic residues that belong to the B, C, D, and E helices. Each residue was substituted by alanine, and equilibrium pH‐induced transitions in apomyoglobin and its mutants were studied by circular dichroism and fluorescent spectroscopy. The obtained results allowed estimating changes in their free energy during formation of the intermediate state. It was first shown that the strength of side chain interactions in the apomyoglobin intermediate state amounts to 15–50% of that in its native state for conserved residues, and practically to 0% for nonconserved residues. These results allow a better understanding of interactions occurring in the intermediate state and shed light on involvement of certain residues in protein folding at different stages.     

How do roots penetrate strong soil?

The mechanical and physiological bases for root growth against high mechanical impedance are reviewed. The best estimates of maximum axial root growth pressure (_max) in completely impeded pea roots appear to be from 0.5 to 0.6 MPa, which results from a turgor pressure of about 0.8 MPa. When roots are incompletely impeded, a range of responses has been reported. Roots do not change elongation rate in a simple mechanical way in response to changes in mechanical impedance. Instead, ethylene might play a key role in mediating an increase in root diameter and a decrease in elongation rate. These changes persist for some hours or days after impedance is removed. Differences between species in their ability to penetrate strong soil layers are not related to differences in _max, but appear to be due to differences in root diameter. In rice, differences between cultivars in the ability of their roots to penetrate strong wax layers are not related to their elongation rates through uniformly strong media. Differences between species or cultivars in their ability to penetrate strong layers may be due to differences in the tendency of roots to deflect or buckle when they grow from a weak to a strong environment.