Autocatalytic enzyme system for amplification of light signals

High-sensitivity systems are considered in which a low trypsin (EC 3.4.21.4) concentration can be increased by several factors by means of an autoactivation reaction. This amplification of a catalyst makes it possible to reveal weak effects resulting in trypsin generation. For this purpose, the pH-dependent and light-sensitive systems inducing active trypsin have been studied in the presence of trypsinogen. The application of such systems to detect superweak light signals has been shown to be practicable.     

成熟小麦抗穗发芽能力与超弱发光关系的研究

生物体的超弱发光表现与其本身的生理活动密切相关,利用超弱发光为指标,测定和比较了小麦不同品种在成熟时抗穗发芽的能力．为其进一步应用,解决农业实际问题提供方法和依据．     

Induced bacterial chemiluminescence

Oxygen-peroxide-induced superweak luminescence of some microorganisms has been studied by means of the native chemiluminometer KhLM1Ts-01. It is established that total chemiluminescence decrease in the bacteria as follows: Escherichia coli----Bacillus subtilis----Proteus vulgaris----Bacillus mycoides----B. licheniformis----Pseudomonas aeruginosa----Staphylococcus epidermidis----S. aureus----Serratia marcescens----Salmonella enteritidis. A hypothesis is put forward on a possible mechanisms of appearance of the superweak luminescence of bacteria and expediency to use chemoluminometry to differentiate microorganisms.     

盐胁迫下豌豆幼苗的超弱发光

通过钠盐对豌豆 (pisumsativum)萌发时超弱发光影响的比较研究表明 ,在等渗条件下豌豆幼苗受激发光强度顺序为Na2 CO3 >NaCl>Na2 SO4 ;Na2 CO3 盐胁迫对植物的伤害程度高于其他盐类 ;多盐比单盐存在时的毒害小 ,受激发光作用降低。利用超弱发光方法 ,可以分析盐害对植物的作用 ,进一步搞清胁迫条件下植物生理反应的变化规律。     

Influence of parameter perturbations on the reachability of therapeutic target in systems with switchings

Background

Examination of physiological processes and the influences of the drugs on them can be efficiently supported by mathematical modeling. One of the biggest problems is related to the exact fitting of the parameters of a model. Conditions inside the organism change dynamically, so the rates of processes are very difficult to estimate. Perturbations in the model parameters influence the steady state so a desired therapeutic goal may not be reached. Here we investigate the effect of parameter deviation on the steady state in three simple models of the influence of a therapeutic drug on its target protein. Two types of changes in the model parameters are taken into account: small perturbations in the system parameter values, and changes in the switching time of a specific parameter. Additionally, we examine the systems response in case of a drug concentration decreasing with time.

Results

The models which we analyze are simplified, because we want to avoid influences of complex dynamics on the results. A system with a negative feedback loop is the most robust and the most rapid, so it requires the largest drug dose but the effects are observed very quickly. On the other hand a system with positive feedback is very sensitive to changes, so small drug doses are sufficient to reach a therapeutic target. In systems without feedback or with positive feedback, perturbations in the model parameters have a bigger influence on the reachability of the therapeutic target than in systems with negative feedback. Drug degradation or inactivation in biological systems enforces multiple drug applications to maintain the level of a drug’s target under the desired threshold. The frequency of drug application should be fitted to the system dynamics, because the response velocity is tightly related to the therapeutic effectiveness and the time for achieving the goal.

Conclusions

Systems with different types of regulation vary in their dynamics and characteristic features. Depending on the feedback loop, different types of therapy may be the most appropriate, and deviations in the model parameters have different influences on the reachability of the therapeutic target.

     

Sharing time on the fly

The investigation of circadian clock function in Drosophila has progressed from the identification of clock genes to the analysis of timing mechanisms in the cells and tissues where these genes are expressed. As the biological context for investigating circadian clock systems is expanded, new features of molecular timing mechanisms are becoming apparent. Examples come first from studies on peripheral clocks, which perform local, tissue-specific functions as well as global functions that relate to the control of individual behavior, and second from the evaluation of social influences on circadian rhythms. The identification of inter-organismal components of the circadian system in Drosophila suggests new perspectives as the progression continues from the systems level to the social level and onwards to the level of ecosystems.     

An analysis of the interaction of the parietal and visual regions of the cortex with the posterior lateral nucleus of the thalamus]

Cooling and ablation of the parietal associative (P) and primary visual projection (VI) areas in nembutalized cats revealed facilitating and inhibitory descending influences of the above areas on the postero-lateral nucleus (LP) of the ipsilateral thalamus where visual signals generate an early specific and a late unspecific components of heterogenous evoked responses. Unidirectional influences activating the early component and fully controlling the appearance and course of the late component are more manifest in P which is a part of the same associative brain system as LP; they are less manifest in VI which belongs to the projection system. At later cooling stages the centrifugal influences of P and VI are sometimes of opposite signs; this effect is connected with reciprocal relations between projection and association systems and processes or selfcontrol within the association system. The corticofugal effects also participate in the common activity of P and VI taking place to a certain degree at the level of the LP which activates these cortical structures.     

Compositional dissimilarity patterns of reptiles and amphibians in insular systems around the world

Several studies have shown that taxa with poor dispersal ability have a higher level of compositional dissimilarity than good dispersers. However, compositional dissimilarity patterns between islands with respect to dispersal ability of taxa have never been investigated before. In this study, we investigated compositional dissimilarity patterns of three taxonomic groups, namely amphibians, lizards, and snakes, differing in their dispersal abilities, in various insular systems around the world. We compiled presence–absence matrices, based on which we calculated several metacommunity indices to check for differences among taxonomic groups and island types (oceanic and continental shelf) using classical statistical tests and generalized linear mixed-effects models. According to our results, compositional dissimilarity was positively affected by the isolation of the insular system, in accordance to theory. In particular, oceanic systems were characterized by a high level of compositional dissimilarity between islands and subsequently by a low level of nestedness. SIEs may be generating these patterns causing distortions from expected levels of nestedness. Similar to our predictions, compositional dissimilarity patterns were also dependent on taxon-specific dispersal ability, with good dispersers showing lower levels of between-island compositional dissimilarity than poor dispersers in continental shelf systems. However, this pattern was not observed in oceanic systems. In conclusion, compositional dissimilarity in insular systems is dependent on both taxon and island type.     

Accounting for multiplicities in assessing drug safety: a three-level hierarchical mixture model

Multiple comparisons and other multiplicities are among the most difficult of problems that face statisticians, frequentists, and Bayesians alike. An example is the analysis of the many types of adverse events (AEs) that are recorded in drug clinical trials. We propose a three-level hierarchical mixed model. The most basic level is type of AE. The second level is body system, each of which contains a number of types of possibly related AEs. The highest level is the collection of all body systems. Our analysis allows for borrowing across body systems, but there is greater potential-depending on the actual data-for borrowing within each body system. The probability that a drug has caused a type of AE is greater if its rate is elevated for several types of AEs within the same body system than if the AEs with elevated rates were in different body systems. We give examples to illustrate our method and we describe its application to other types of problems.     

From the Phenomenology to the Mechanisms of Consciousness: Integrated Information Theory 3.0

This paper presents Integrated Information Theory (IIT) of consciousness 3.0, which incorporates several advances over previous formulations. IIT starts from phenomenological axioms: information says that each experience is specific – it is what it is by how it differs from alternative experiences; integration says that it is unified – irreducible to non-interdependent components; exclusion says that it has unique borders and a particular spatio-temporal grain. These axioms are formalized into postulates that prescribe how physical mechanisms, such as neurons or logic gates, must be configured to generate experience (phenomenology). The postulates are used to define intrinsic information as “differences that make a difference” within a system, and integrated information as information specified by a whole that cannot be reduced to that specified by its parts. By applying the postulates both at the level of individual mechanisms and at the level of systems of mechanisms, IIT arrives at an identity: an experience is a maximally irreducible conceptual structure (MICS, a constellation of concepts in qualia space), and the set of elements that generates it constitutes a complex. According to IIT, a MICS specifies the quality of an experience and integrated information Φ^Max its quantity. From the theory follow several results, including: a system of mechanisms may condense into a major complex and non-overlapping minor complexes; the concepts that specify the quality of an experience are always about the complex itself and relate only indirectly to the external environment; anatomical connectivity influences complexes and associated MICS; a complex can generate a MICS even if its elements are inactive; simple systems can be minimally conscious; complicated systems can be unconscious; there can be true “zombies” – unconscious feed-forward systems that are functionally equivalent to conscious complexes.     

Gravitational biology of integrative organisms and ecological system--the road map of space activities]

History of the International Space Station, ISS, and planning of its scientific use are described in this essay. Fundamental gravitational biology and its facility on the ISS have been identified to have the highest priority to conduct scientific experiments with variable G environment in orbit. The road map of space activities is clearly directing the efforts toward manned Mars exploration. The Centrifuge is a core element of the facilities dedicated to this endeavor. Several research subjects are discussed with the results obtained from the past space experiments. Direct effects of gravity on the biological system at the level of integrative organisms are major subjects of study that will be conducted on the large scaled centrifuge.     

Analysis of the effect of medium and membrane conductance on the amplitude and kinetics of membrane potentials induced by externally applied electric fields.

The kinetics and amplitudes of membrane potential induced by externally applied electric field pulses are determined for a spherical lipid bilayer using a voltage-sensitive dye. Several experimental parameters were systematically varied. These included the incorporation of gramicidin into the membrane to alter its conductivity and the variation of the external electrolyte conductivity via changes in salt concentration. The ability of the solution to Laplace's equation for a spherical dielectric shell to quantitatively describe the membrane potential induced on a lipid bilayer could thus be critically evaluated. Both the amplitude and the kinetics of the induced potential were consistent with the predictions of this simple model, even at the extremes of membrane conductance or electrolyte concentration. The success of the experimental approach for this system encourages its application to more complex problems such as electroporation and the influences of external electric fields in growth and development.     

Consumer functional response and competition in consumer-resource systems

This study investigates the effect of the functional response of resource consumers on the relationship between resource overlap and competition for some two-consumer, two-resource models. Two measures of competition are examined: α, the competition coefficient, and β, an index of the ease of invasion by the second consumer species when the first is at its carrying capacity. A comparison of systems with linear (type-1) and decelerating (type-2) functional responses shows that: (1) Competition coefficients are functions of the population densities of consumers or resources in systems with type-2 responses. (2) Competition coefficients may differ substantially in magnitude between systems with type-1 and type-2 functional responses. (3) The relative handling time of different resources is important in determining the relationship between overlap and competition. Positive correlations between capture rates (per unit resource) and handling times cause the system with type-2 functional responses to exhibit a higher level of competition for a given level of overlap than for the case of negative correlation. (4) If the functional response is type-2 it may be possible to obtain a priority effect in which either consumer species can exclude the other. (5) Invasion may be easier in a system with type-1 functional responses than in a similar system with type-2 functional responses, even when competition coefficients are larger in the former. Accelerating functional responses also affect the relationship between overlap and competition, but realistic models of such responses are likely to be very complex. Several currently accepted ideas in competition theory depend upon the assumption of a linear functional response, and are unlikely to be generally valid.     

Intrinsic and extrinsic influences on cardiac rhythms in crustaceans

Several factors cause predictable changes in heart rate of crustaceans thus affecting basic heart rhythms. In decapod crustaceans these consist of: many internal factors including influences from neural and neurohormonal systems and chemosensory influences; many external factors including startling stimuli and other disturbance; ventilatory (scaphognathite) reversals; tail flips and other postural movements including locomotor activity; and variations in environmental factors such as oxygen level, temperature and air-exposure. In many cases the initial response involves temporary bradycardia or cardiac arrest. These responses may quickly facilitate to sustained low level stimuli although maintained strong stimulation will eventually be associated with cardio-acceleration and escape responses. Measurement of change in heart rate alone is rarely a sensible monitor of cardiac performance in crustaceans since simultaneous changes in cardiac stroke volume occur which may confound diagnosis. Hypoxia for instance causes decrease in heart rate of adult crustaceans but the apparent decrease in cardiac output is offset or reversed by increase in stroke volume. Concomitant changes occur in cardiac output and in the proportion of cardiac output which is delivered to particular tissues. In fact change in heart rhythm is only one factor in a complex suite of responses involving several physiological systems which compensate uniquely for changes in environmental or other stimuli. Both neural and neuro-hormonal factors are known to play a role in control of these complex responses.     

Mutagenicity of N4-aminocytidine and its derivatives in Chinese hamster lung V79 cells. Incorporation of N4-aminocytosine into cellular DNA

N4-Aminocytidine induced mutation to 6-thioguanine resistance in Chinese hamster lung V79 cells in culture. Previous studies with experimental systems of in vitro DNA synthesis and of phage and bacterial mutagenesis have shown that this nucleoside analog induces base-pair transitions through its incorporation into DNA, with its erroneous base-pairing property. Incorporation of exogenously added [5-3H]N4-aminocytidine into the DNA of V79 cells was in fact observed in the present study. N4-Aminodeoxycytidine was not mutagenic for the V79 cells. Several alkylated N4-aminocytidine derivatives were tested for their mutagenicity in this system. Those with an alkyl group on the N'-nitrogen of the hydrazino group at position 4 of N4-aminocytidine were mutagenic, but those having an alkyl on the N4-nitrogen were not. These results are consistent with those previously observed in the bacterial mutagenesis systems, and agree with a mechanism of mutation in which a tautomerization of N4-aminocytosine is the necessary step for causing the erroneous base pairing.     

Physiological actions of angiotensin II on the kidney.

The importance of angiotensin as a modulator of renal function is well documented. Several lines of evidence suggest strongly that angiotensin plays an important role in the maintenance of renal vascular resistance and arterial pressure in several physiological and pathophysiological states with increased activity of the renin-angiotensin system. Angiotensin also acts as a physiological "brake" on excessive release of renin from juxtaglomerular cells. Angiotensin influences renal sodium excretion via its renal vascular actions to change the glomerular filtration rate and, thus, the filtered load of sodium; in addition, angiotensin influences tubular reabsorption of sodium by altering the filtration fraction and the balance of Starling forces in the peritubular capillaries.     

A simulation method for the firing sequences of motor units.

The firing sequences of motoneurons contain important information with regard to the underlying neural processes. Several methods have been proposed in the literature to simulate these sequences, however, one of the limitations is that they are not capable of simulating the complex neural dynamics of motor neurons, especially those of concurrently active ones, such as motor unit synchrony and motor unit common drive. In this paper, a novel model based on the Hodgkin-Huxley (HH) system is proposed, which has the ability to simulate the complex neurodynamics of the firing sequences of motor neurons. The model is presented at the cellular level and network level, and some simulation results from a simple 3-neuron network are presented to demonstrate its applications.     

Prey dispersal and predator persistence

To understand how patchiness influences population dynamics of a tri-trophic interaction, a tractable model is formulated in terms of differential equations. Motivated by the structure of systems such as plants, phytophagous mites and predatory mites, the model takes dispersal into account at the middle trophic level. The effect of dispersal for the middle level in a tri-trophic system could be either stabilising or destabilising since the middle level acts both as prey and as predator. First a simple model with logistic growth for the lowest level is formulated. A model with logistic growth for the lowest level and instantaneous dispersal has a globally stable three-species equilibrium, if this equilibrium exists. Addition of a middle level dispersal phase of non-negligible duration influences equilibrium stability. In the absence of the top trophic level a limit cycle can occur, caused by the delay that exists in the reaction of the middle level to the changes in the lowest level. With low predator efficiency, it is also possible to have an unstable three-species equilibrium. So addition of a middle level dispersal phase of non-negligible duration can work destabilising. Next the persistence of the third trophic level is studied. Even when the three-species equilibrium exists, the third trophic level need not be persistent. A two-species limit cycle can keep its stability when a three-species equilibrium exists; the system is then bistable. It is argued that such a bistability can offer an alternative explanation for pesticide-induced outbreaks of spider mites and failure of predator introduction.