Soil–plant relationship along a semiarid gypsum gradient (Rio de Aguas,SE Spain)

Gypsum outcrops of southeastern Spain (Almeria) have been highlighted as the most outstanding for the conservation of Iberian gypsum flora by flora rarity and richness, as vascular as cryptogamic plants. However, plant community distribution patterns according to soil chemical properties have been little studied in these gypsum areas. Spatial distribution pattern of plant communities in gypsum hills and its relation to soil chemical properties was surveyed in this study. Twenty-one plots (5 × 5 m) were settled along a semiarid gypsum gradient in Rio de Aguas Basin. Soil samples were taken from each plot’s superficial layer for chemical analysis. Plant canopy cover was sampled at species level. Three plant community bands are identified (from bottom to top) as level I (Flat Piedmont Zone), level II (Hill Slope Zone), and level III (Hill Top Zone). Gypsophyte species (mainly found in level II) appear to be specifically adapted to nutrient-stressed environments (high sulfate content and deficiency in some soil nutrients). Nutrients play an essential ecological role in determining species distribution and community composition. Since this area is a very important site for extracting very high quality gypsum, the pattern described here can be used as a useful tool for ecological restoration of gypsum quarries. Considering environmental heterogeneity of gypsum areas (as an “ecosystem of reference”) is crucial for a successful ecological restoration.     

Genetic diversity,genetic structure and phylogeography of the Iberian endemic Gypsophila struthium (Caryophyllaceae) as revealed by AFLP and plastid DNA sequences: connecting habitat fragmentation and diversification

Iberian gypsum outcrops are highly fragmented and ecologically challenging environments for plant colonization. As gypsophytes occur exclusively in such habitats, they are ideal models for the study of both the effects of habitat fragmentation and selection on population genetic diversity and structure. In this study, we used amplified fragment length polymorphism (AFLP) and plastid DNA sequences to investigate the phylogeographical history of the Iberian plant Gypsophila struthium (Caryophyllaceae), a widespread endemic restricted to Iberian gypsum outcrops. Gypsophila struthium consists of two subspecies that differ in the architecture of their inflorescence and have mostly allopatric ranges. Gypsophila struthium subsp. struthium occurs in central, eastern and south‐eastern Iberia, whereas G. struthium subsp. hispanica occurs in northern and eastern areas. AFLPs revealed low but significant genetic differentiation between the subspecies, probably as a result of a recent diversification during the Pliocene–Pleistocene. In the geographical contact zone between the taxa, the Bayesian analyses revealed populations with mixed ancestries and genetic clusters predominantly of one or the other subspecies, indicating incomplete reproductive barriers between them. Plastid DNA haplotypes revealed strong geographical structure and testified to processes of isolation by distance and continuous range expansion for some haplotype clades. The Bayesian analyses of the population structure of AFLP data and nested clade phylogeographical analysis (NCPA) of plastid haplotypes revealed that the putative ancestral range corresponded to central and eastern populations of G. struthium subsp. struthium, with those lineages contributing through more recent expansion to increased genetic diversity and structure of the south‐eastern and eastern ranges of this subspecies and to the diversification of G. struthium subsp. hispanica in northern and eastern gypsum outcrops. © 2013 The Linnean Society of London, Botanical Journal of the Linnean Society, 2013, 173 , 654–675.     

Gypsicolous flora, conservation and restoration of quarries in the southeast of the Iberian Peninsula

The southeast of the Iberian Peninsula, more precisely, the province of Almería, has the most important gypsum quarries in Spain. Despite the severe environmental impact of these quarries, so far little attention has been paid to either the effect on the flora, especially on the more restricted endemic taxa, or to the restoration of the habitats after the end of exploitation. It is our view that restoration of gypsum quarries should aim not only at correcting the visual impact of mining on the landscape, but should also attend to the biological impact of the quarrying. Although the cicatrising potential of gypsophytes is already well known, not all the species are able to recolonise worked-out quarries. Using species abundances, all analysis clearly show that artificial rehabilitation results in very altered communities. The preservation of the gypsum flora merits prioritary protective strategies which, at least to some extent, would make gypsum mining and nature conservation compatible.     

Identifying key habitats for the conservation of Bonelli's Eagle Aquila fasciata using radiotracking

Identifying the priority habitats of endangered species is crucial to implementing effective conservation actions. We characterize the key habitats used by Bonelli's Eagle Aquila fasciata, an umbrella and flagship species that is endangered in Mediterranean countries. We radiotracked 17 breeding individuals (10 males and seven females) in Catalonia (NE Iberian Peninsula) and used compositional analysis to determine the key habitats in home‐ranges of both sexes. The main habitats identified within the home‐range area were scrubland, coniferous forests, cropland, sclerophyllous forests, rock outcrops and urban areas, with little difference in habitat use between the sexes. Bonelli's Eagles preferred rocky habitats as breeding areas and scrubland as foraging areas, as these hold the highest abundance of their main prey, Rabbits Oryctolagus cuniculus and Red‐legged Partridges Alectoris rufa. Habitat selection varied seasonally in foraging areas: scrubland was the most preferred habitat type during the breeding season, whereas rocky areas were preferred during the non‐breeding season (although scrubland was also highly selected). Urban areas were avoided both as breeding and as foraging areas. Home‐range size was inversely correlated with the proportion of scrubland, suggesting that this is a key habitat for Bonelli's Eagle. To conserve this species effectively, policies that ensure the preservation of the cliffs used as breeding sites, as well as suitable management of the scrubland used for foraging, should be implemented in the areas inhabited by this species. The promotion of traditional land uses and management techniques that will enhance open areas in Mediterranean landscapes should in the future play an essential role in the conservation of Bonelli's Eagle in Mediterranean habitats.     

Composition, geographical affinities and endemism of the Iberian Peninsula orchid flora

The orchid flora of the Iberian Peninsula is relatively well known, but its biogeographical and diversity patterns have until now remained unanalysed. This work compares the richness of this flora with that of 27 other territories in different continents and at different latitudes, with the aim of establishing whether it is richer or poorer than might be expected. Latitude was found to be an excellent predictor of regional orchid species richness. With 122 taxa, the orchid flora of the Iberian Peninsula is more or less as diverse as that of other Mediterranean areas of similar latitude (e.g. France, Greece or Italy), but more diverse than other European or indeed North African orchid floras. In this study, the Iberian orchid species were assigned to eight monophyletic clades and the global distribution of these are mapped to establish continental affinities between the floras. A recent floristic account on the Iberian orchids was also used to assign the orchid taxa to habitats, and the relationship between the number of endemisms and their habitats was analysed. The patterns of endemism differed in different habitats. Very high levels of endemism were found in habitats peculiar to the Mediterranean Basin, indicating the relict status of its orchid flora.     

Gypsophile vegetation patterns under a range of soil properties induced by topographical position

Iberian gypsophile plant communities are considered a priority for conservation by the European Community because of their highly specialized flora in gypsum outcrops in arid and semiarid regions. Despite the ecological importance of these ecosystems, the edaphic factors that constrain plant communities on gypsiferous soils remain unclear. It has been proposed that both the chemical and physical restrictive conditions of gypsum soils determine gypsophily in plants. Here we hypothesize that the rigors of the gypsum soil environment depends on topography, decreasing from flat areas on hilltops to south-oriented slopes and finally to slopes oriented to the north. We also hypothesized that the relaxation of the rigors of the gypsum soil environment with topography affects both to individual plant and community characteristics of gypsophile vegetation: we expect a reduction of gypsophyte abundance, an increase of diversity and the amelioration of facilitative interactions of plant species. We analysed the physical and chemical properties of gypsum soils that have been proposed that determine the rigors of the gypsum soil environment (i.e.: unbalanced ion concentrations and superficial soil crust). The predicted rigor gradient along topographical locations was confirmed and was mainly caused by superficial soil crust. The decreasing rigor gradient was accompanied by a fall in the abundance of gypsophytes. However, when gypsophytes were considered separately, several patterns were observed, indicating distinct tolerance to relaxation of rigor of the gypsum soil conditions and different competition abilities between gypsophytes. Plant species were more clumped, and gypsophile communities presented higher diversity, evenness and richness values where rigor of gypsum soil conditions were maximum (flat hilltop positions). Relaxation of rigor (north-oriented slopes) was characterized by loss of facilitative interaction between species and the dominance of the gypsovag Rosmarinus officinalis L., although richness was still very high, which can be attributed to the coexistence of gypsophytes and gypsovags. We conclude that the rigor of gypsum soil environment gradient with topography is mainly determined by superficial soil crust, and it is a crucial determinant of gypsophile plant communities.     

A new method for calculating Risk Tolerance in the assessment of threatened flora

This paper reports on a proposed method for evaluating threat categories for regional flora, based mainly on phytogeographical data. The method involves the creation of current distribution maps, analysis of threat factors and use of the RAMAS Red List software to facilitate rapid and objective classification of taxa in accordance with 2001 IUCN criteria. In order to ensure a more objective approach by the assessor and reduce the range of uncertainty, an index was created for calculating Risk Tolerance (RT) that enabled adjustment of the results obtained and thus supplemented the software used. For trial purposes, the proposed model was applied to Spanish gypsophilous flora currently protected under Spanish regional legislation. When classified using the new model, the taxa in question were placed in very different categories, ranging from least concern (LC) to endangered (EN), indicating the need to redefine both their current legal status and recommended management measures. Use of this method will enable scientists to optimise available information on the geographical distribution of endangered taxa, and help governments both to optimise their financial investment in conservation and to define their priorities. The authors endorse the use of IUCN categories in legal protection texts, and advocate as essential a greater degree of coordination between scientists and governments.     

Secondary old‐field succession in an ecosystem with restrictive soils: does time from abandonment matter?

Question: Our knowledge of secondary old‐field succession in Mediterranean environments is extremely poor and is non‐existent for restrictive soil conditions. How these ecosystems, such as those on semi‐arid gypsum outcrops, recover seems a priority for managing change and for ensuring conservation of specialized and endangered biota. We tested whether reinstallation of gypsum vegetation after cropland abandonment requires: (1) soil physical restructuring and (2) chemical readjustment to enable growth and survival of specialized gypsophilous vegetation, and more specifically how time from abandonment drives such environmental change. Location: We sampled a complete set of old fields on gypsum soils (1–60 yr since abandonment) in Villarrubia de Santiago (Toledo, Spain). Methods: Generalized linear models and model comparisons were used to analyse the effect of several environmental parameters on species abundance and richness. Ordination methods (canonical correspondence analyses and partial canonical correspondence analyses) were undertaken to evaluate compositional variation among the sampled fields. Results: Secondary old‐field succession on semi‐arid Mediterranean gypsum soils was controlled by a complex set of factors acting relatively independently. Surprisingly, time since abandonment explains only a small proportion of compositional variation (3%). Conversely, soil chemical features independently from time since abandonment are important for explaining differences found in old‐field composition. Conclusions: Secondary succession on specialized Mediterranean soils does not follow the widely described “amelioration” process in which soil features and composition are closely related over time. Restrictive soil conditions control both structure and functioning of mature communities and also secondary succession.     

Gypsum Physical Soil Crusts and the Existence of Gypsophytes in Semi-arid Central Spain

Probably gypsophytes are the most interesting set of edaphic specialists of arid and semiarid climates. Despite they conform a global biodiversity priority, there are almost no information about those adaptive traits that confer such a specialised behaviour. Our broad hypothesis is that gypsophytes are “refuge-endemics” that are able to grow on gypsum soils due to their ability to surpass extremely hard gypsum soil physical crust during emergence. With this in mind we have conducted an experimental approach combining field and greenhouse assays. Seeds from two gypsophytes, genuine and widely distributed in the Iberian Peninsula gypsophytes (Helianthemum squamatum and Lepidium subulatum) and one gypsovag (Teucrium capitatum), a generalist plant that can also grow on gypsum soils were used in our experiments. Two complementary experimental approaches were conducted. The first involved a field experiment in which the presence or absence of the physical crust together with the sowing date were manipulated and a greenhouse experiment in which the irrigation amount and the types of soil were controlled. Variables of interest were the percentage of germination, growth and survival. In the field experiment we found a significant decrease in the final germination of the gypsovag in the plots with intact crusts. On the other hand, H. squamatum is able to grow in the three tested soils, despite higher survival and growth on genuine gypsum soils. Our results confirm the hypothesis that gypsum edaphic specialists base their behaviour to a great extent on the ability to surpass extremely hard gypsum surface crusts, although this seems a marginal adaptive trait as shown by the capability to grow on a complete array of soils and the negative effect of the crust along the earlier development life stages of gypsophytes. Furthermore, a gypsovag such as Teucrium capitatum presents extreme difficulties to emerge on non-disturbed gypsum physical crusts but once surpassed its growth and survival is not limited.     

Plants living on gypsum: beyond the specialist model

BACKGROUND AND AIMS: Plants from gypsum habitats are classified as gypsophiles and gypsovags. The former include both narrow endemics limited to small gypsum areas and regionally dominant gypsophiles growing in gypsum areas of large regions, whereas gypsovags are plants that can grow both in gypsum and non-gypsum soils. Factors controlling the distribution of gypsum plants are still not fully understood. METHODS: To assess how the different types of gypsum plants deal with the stressful conditions of gypsum substrates, comparisons were made of the leaf chemical composition of four gypsovags, five regionally dominant gypsophiles and four narrow gypsum endemics growing in two massive gypsum areas of the Iberian Peninsula. KEY RESULTS: The chemical composition of gypsovags was clearly different from regionally dominant gypsophiles, while the chemical composition of narrow-gypsophile endemics was more similar to the chemical composition of gypsovags than to that of regionally dominant gypsophiles. Regionally dominant gypsophiles showed higher concentrations of ash, Ca, S, N, Mg P and Na, whereas gypsovags and local gypsophile endemics displayed higher concentrations of C and greater C : N ratios. CONCLUSIONS: Such differences suggest that the three groups of gypsum plants follow diverse ecological strategies. It is suggested that regionally dominant gypsophiles might fit the 'specialist' model, being species specifically adapted to gypsum, whereas both gypsovags and narrow-gypsophile endemics might fit the 'refuge' model, being stress-tolerant species that find refuge on gypsum soils from competition. The analysis of the leaf chemical composition could be a good predictor of the degree of plants specialization to gypsum soils.     

The subnival–nival vascular plant species of Iran: a unique high-mountain flora and its threat from climate warming

This study provides a first country-wide overview of the vertical distribution patterns and the chorology of vascular plant species that occur in the uppermost elevation zones in Iran. The current distribution patterns are discussed with respect to potential warming-induced species losses. Iran’s subnival and nival vegetation zones are found at elevations above 3600–3900 m in a highly fragmented distribution across Alborz, Zagros, and NW-Iran. Based on literature research and on field observations, all vascular plant species living in the subnival–nival zone of Iranian mountains were identified (151 species) and classified into three altitudinal groups: Group A comprises species that occur mainly in subnival–nival habitats (51 species). Group B are species being common in subnival–nival areas but are equally present in the alpine zone (56 species). Group C are species that can reach to subnival areas but also grow in alpine, subalpine and sometimes lower altitudes (44 species). The chorological patterns differ among the three groups. The percentage of species being endemic to Iran decreases from group A, to B and C, with 68, 53 and 20%, respectively. A narrow altitudinal distribution at high elevations is clearly related to a small-scaled geographical distribution range. The outstanding rate of high-altitude endemism appears to result mainly from orographic isolation of the country’s highly scattered cold areas and by the absence of extensive Pleistocene glaciations. The narrow distribution of most of Iran’s cold-adapted mountain flora and the low potential of alternative cold habitats render it highly vulnerable to climate change.     

Strengthening the Natural and National Park system of Iberia to conserve vascular plants

The diversity of the Iberian vascular flora has been investigated using WORLDMAP versions 3.08 and 3.18. Two data sets scoring plant distributions as presences within the Iberian Peninsula were compiled; one for 2133 species at 50 × 50 km grid and the other for 801 species at 10 × 10 km map grids. Patterns of biodiversity were determined using the diversity measures of species richness, range-size rarity and character richness diversity. Using the diversity measures, combined with an area selection method, maps of priority areas were calculated using iterative procedures. Near minimum sets (NMSs) for both scales were calculated. Comparison of the NMS for the 10 × 10 km grid with the near minimum set for existing reserves (NMSER) showed that at least 2% more of the land surface would be required above and beyond the existing protected area network, currently comprising 6% of the area, to ensure representation of all species at least once as listed within the present data-base. It is demonstrated that reserve systems selected on a variety of different criteria are suboptimal when compared to particular groups of target organisms with a definite goal of representation for conservation. Calculating efficiency of existing reserve systems and accounting for all taxa identifies precisely the extra required areas for the protected area system to satisfy particular goals of representation.     

Devonian floral assemblages and plant megafossils from the Iberian Peninsula: A review

This paper presents a review and critical analysis of the literature on Devonian floras of the Iberian Peninsula. Although the known outcrops of Devonian strata in the Iberian Peninsula are marine, in some cases, a few fragmentary remains of vascular plants are associated with faunal remains. Records include largely specimens from the Lower Devonian of Barrancos (Alentejo, Portugal) and the Upper Devonian of Sierra de Hornachos in Badajoz province, southwest Spain; the remainder consists of drifted plant fragments from scattered sites in the Iberian Peninsula ranging in age from Lochkovian to Upper Devonian-Earliest Carboniferous. The vegetation inferred for the Lower Devonian of the Iberian Peninsula is mainly based on palynological data and corresponds to herbaceous types characterised by bryophytes, rhyniophytes (Horneophyton, Cooksonia, Rhynia), trimerophytes (Psilophyton, Pertica and Hostinella), primitive lycophytes (Drepanophycus) and incertae sedis such as Nothia and Chaleuria, all flora that developed near the coast in low-lying and, at least periodically, wet areas. In the Middle Devonian, two vegetation strata can be recognised: herbaceous (Psilophyton) and semi-arboreal (Cladoxylales). Although three levels of vegetation in the Upper Devonian, have been described from outcrops worldwide, the scarce available data from the Iberian Peninsula only indicate an arborescent lycopsid vegetation and species with uncertain botanical affinity such as Sphenopteridium keilhauii Nathorst.     

Bird communities of the Iberian shrubsteppes

Bird communities of high, cold shrubsteppes (páramos) and low, warm shrubsteppes (semideserts) of the Iberian Peninsula were studied using the line-transect method. The seven censused areas are distributed from north to south approximately forming a climatic gradient along which temperature increases and precipitation decreases. Alauda arvensis and Oenanthe oenanthe are typical of páramos and O. hispanica and the genus Galerida of semideserts, while Calandrella cinerea is the most widely distributed passerine. Páramos tend to have high spring densities whereas semideserts have high densities and greater diversity during winter. Changes of density between spring and winter are less pronounced in semideserts, showing a relation with the temperature decrease from north to south. These tendencies agree with those found in other habitats (scrublands and forests) along a north-south transect throughout the Iberia Peninsula, indicating that distribution and abundance of the winter avifauna respond positively to increase of temperature.     

Positive and negative unintended human-induced effects on Iberian mole abundance at the edge of its distribution area

Humans can unintentionally induce both positive and negative effects on wildlife presence and abundance, with organisms living in or associated with agricultural areas being good examples. Our study focused on a 1500 ha area (75 sampled 100 m × 50 m plots) at the driest edge of the endemic Iberian mole Talpa occidentalis distribution range, where the species is listed as “Vulnerable”. Here, poplar cultivations dominate wasteland and other irrigated and non-irrigated crops. The poplar irrigation system was traditionally based on a network of straight ridges, although it is rapidly being replaced with a sophisticated procedure which permits water to spread with ridges no longer being needed. In these habitats, ridges are relevant for moles because they provide dry shelters for nests. In this paper we explore (a) mole local habitat preferences and (b) the impact of changes in poplar irrigation systems on mole abundance. Iberian mole abundance positively related to earthworm biomass and numbers; however, multivariate analyses highlighted the effect of herbaceous cover (positive relationship), rocks cover and soil hardness (negative relationship), and habitat type (poplar being the preferred one). Furthermore, mole abundance was substantially higher in poplar groves where ridges were still present than where they were not. We conclude that Iberian moles in semi-arid environments are favoured by poplar plantations but, at the same time, they are highly vulnerable to recent changes in traditional agriculture practices. Therefore, this study shows how agricultural habitats can benefit some species of conservation concern, especially some temperate species at the edge of their range or in extreme ecological conditions. Changes in agricultural practices that negatively affect the suitability of such habitats can compromise these species's conservation, as we found for the Iberian mole.     

Modelling habitat use by Iberian hare <Emphasis Type="Italic">Lepus granatensis</Emphasis> and European wild rabbit <Emphasis Type="Italic">Oryctolagus cuniculus</Emphasis> in a mountainous area in northwestern Spain

We developed broad-scale habitat use models for the distribution of the Iberian hare Lepus granatensis Rosenhaeur, 1856 and the relative abundance of the European wild rabbit Oryctolagus cuniculus (Linnaeus, 1758) in a mountainous area in north-western Spain, the Baixa Limia Site of Community Importance (SCI). For the Iberian hare, the most parsimonious model included average altitude, average slope, scrub-pasture area and length of border between scrublands and forests. Four variables were consequential, 2 of them with a positive sign for the presence of the hare (average altitude and scrubland area) and 2 with a negative one (average slope and length of border between scrubland and forest). For the European wild rabbit the most parsimonious General Linear model obtained included average altitude and scrub-forest edge. Only 2 predictors were consequential, both with a negative sign on the relative abundance of wild rabbits: the average altitude and length of border between scrubland and forest. The models obtained indicated the need of management actions to favour open habitats with suitable vegetation structure, avoiding extensive reforestation. A revision of the current hunting plans in the protected area of Baixa Limia is required.     

Comparison of Southern Appalachian high-elevation outcrop plant communities with their Northern Appalachian counterparts

Abstract. Southern Appalachian high-elevation outcrops harbour six regionally rare Northern Appalachian taxa usually considered relicts of a Pleistocene alpine flora. For five of the six taxa, minimum elevation in the south was 367–1113 m higher than in the north. While habitats compared between the two regions share only 9% of their total flora, individual plots had up to 70% of their species occurring in the opposite region. The northern affinity of southern outcrops increased with elevation, slope steepness, soil Cu, B and SO₄ and decreased with potential solar radiation and soil Na. As a result, communities above 1600 m on felsic bedrock, and above 1350 m on mafic bedrock, were most northern in composition. Northern affinity of southern outcrops also increased with latitude, which may partly result from closer geographic proximity to past communities that provided progenitors for the current northern flora. Northern treeless habitats increased in southern affinity with increased slope steepness, perennial seepage, vegetation height, shade, soil pH, Al, Mn, Na and decreased elevation and organic matter. As a result, northern outcrop communities below treeline were most similar to those on southern outcrops. This suggests that southern outcrop vegetation may be more similar to Pleistocene outcrop vegetation than to Pleistocene alpine vegetation. Partial constrained ordination showed that while compositional differences between the Northern and Southern Appalachian habitats were largely explained by environmental differences, there was a significant component of residual variation explained by north or south position that was unrelated to environment. These residual compositional differences may result from historical influences on community structure involving stochastic extinction and colonization processes.     

Range-habitat relationships of vascular plant species at the taiga forest-steppe borderline in the western Khentey Mountains,northern Mongolia

World distribution of 488 out of 619 vascular plant species known from an area of 500 km² within the western Khentey Mountains, northern Mongolia is analyzed. Most species belong to Eastern Asian (29%) or Asian, Eurasian, or circumpolar temperate species (24%) supporting the classification of the Khentey Mountains as part of the temperate zone of Eurasia. Seventeen percent of species are boreal plants. Circumpolar temperate-boreal (9%), Central (-Eastern) Asian (9%), Continental mountain species (5%), Middle-Central Asian (3%), arctic-alpine (3%) as well as Western Eurasian and western Siberian species are of lower significance for the flora of the western Khentey Mountains. Eastern Asian species occur in all types of habitats, whereas plants of other distribution types are focused on certain habitats. Boreal species preferably grow in the dark taiga, which prevails in the upper montane belt and on northern and eastern slopes of the most humid parts of the lower montane belt. Temperate and temperate-boreal species prefer subtaiga forests, which are found on northern and eastern slopes in drier parts of the lower montane belt as well as in upper parts of sun-exposed, southern and western slopes of the lower montane belt. Central (-Eastern) Asian and Middle-Central Asian species primarily inhabit forest steppe habitats, such as meadow and mountain steppes, Ulmus pumila open woodlands and dry Pinus sylvestris forests on steep, southern slopes.     

The xeric side of the Brazilian Atlantic Forest: The forces shaping phylogeographic structure of cacti

In order to investigate biogeographic influences on xeric biota in the Brazilian Atlantic Forest (BAF), a biodiversity hotspot, we used a monophyletic group including three cactus taxa as a model to perform a phylogeographic study: Cereus fernambucensis subsp. fernambucensis, C. fernambucensis subsp. sericifer, and C. insularis. These cacti are allopatric and grow in xeric habitats along BAF, including isolated granite and gneiss rock outcrops (Inselbergs), sand dune vegetation (Restinga forest), and the rocky shore of an oceanic archipelago (islands of Fernando de Noronha). The nucleotide information from nuclear gene phytochrome C and plastid intergenic spacer trnS‐trnG was used to perform different approaches and statistical analyses, comprising population structure, demographic changes, phylogenetic relationships, and biogeographic reconstruction in both spatial and temporal scales. We recovered four allopatric population groups with highly supported branches in the phylogenetic tree with divergence initiated in the middle Pleistocene: southern distribution of C. fernambucensis subsp. fernambucensis, northern distribution of C. fernambucensis subsp. fernambucensis together with C. insularis, southern distribution of C. fernambucensis subsp. sericifer, and northern distribution of C. fernambucensis subsp. sericifer. Further, the results suggest that genetic diversity of population groups was strongly shaped by an initial colonization event from south to north followed by fragmentation. The phylogenetic pattern found for C. insularis is plausible with peripatric speciation in the archipelago of Fernando de Noronha. To explain the phylogeographic patterns, the putative effects of both climatic and sea level changes as well as neotectonic activity during the Pleistocene are discussed.