| EST Pipeline System: Detailed and Automated EST Data Processing and Mining |
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| 作者姓名： | Xu H He L Zhu Y Huang W Fang L Tao L Zhu Y Cai L Xu H Zhang L Xu H Zhou Y |
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| 作者单位： | Hao Xu，Ling He，Yuanzhong Zhu，Wei Huang，Lijun Fang，Lin Tao，Yuedong Zhu，Lin Cai，Huayong Xu，Liang Zhang，Hong Yu，and Yan Zhou
Hangzhou Genomics Institute/James D. Watson Institute of Genome Sciences，Zhejiang University/Key Laboratory of Bioinformatics of Zhejiang Province，Hangzhou 310008，China. |
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| 摘 要： | Expressed sequence tags (ESTs) are widely used in gene survey research these years. The EST Pipeline System, software developed by Hangzhou Genomics Institute (HGI), can automatically analyze different scalar EST sequences by suitable methods. All the analysis reports, including those of vector masking, sequence assembly, gene annotation, Gene Ontology classification, and some other analyses, can be browsed and searched as well as downloaded in the Excel format from the web interface, saving research efforts from routine data processing for biological rules embedded in the data.
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EST pipeline system: detailed and automated EST data processing and mining |
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| Xu H,He L,Zhu Y,Huang W,Fang L,Tao L,Zhu Y,Cai L,Xu H,Zhang L,Xu H,Zhou Y.EST Pipeline System: Detailed and Automated EST Data Processing and Mining[J].Genomics Proteomics & Bioinformatics,2003,1(3):236-242. |
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| Authors: | Xu Hao He Ling Zhu Yuanzhong Huang Wei Fang Lijun Tao Lin Zhu Yuedong Cai Lin Xu Huayong Zhang Liang Xu Hong Zhou Yan |
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| Institution: | Hangzhou Genomics Institute/James D. Watson Institute of Genome Sciences, Zhejiang University/Key Laboratory of Bioinformatics of Zhejiang Province, Hangzhou 310008, China. |
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| Abstract: | Expressed sequence tags (ESTs) are widely used in gene survey research these years. The EST Pipeline System, software developed by Hangzhou Genomics Institute (HGI), can automatically analyze different scalar EST sequences by suitable methods. All the analysis reports, including those of vector masking, sequence assembly, gene annotation, Gene Ontology classification, and some other analyses, can be browsed and searched as well as downloaded in the Excel format from the web interface, saving research efforts from routine data processing for biological rules embedded in the data. |
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| Keywords: | EST pipeline data mining relational database Java/J2EE |
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