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NMR assignment of intrinsically disordered self-processing module of the FrpC protein of <Emphasis Type="Italic">Neisseria meningitidis</Emphasis>
Authors:Vojtěch?Kubáň  Ji?í?Nová?ek  Ladislav?Bumba  Email author" target="_blank">Luká???ídekEmail author
Institution:1.CEITEC,Masaryk University,Brno,Czech Republic;2.Institute of Microbiology of the ASCR, v. v. i,Prague 4,Czech Republic
Abstract:The self-processing module (SPM) is an internal segment of the FrpC protein (P415–F591) secreted by the pathogenic Gram-negative bacterium Neisseria meningitidis during meningococcal infection of human upper respiratory tract. SPM mediates ‘protein trans-splicing’, a unique natural mechanism for editing of proteins, which involves a calcium-dependent autocatalytic cleavage of the peptide bond between D414 and P415 and covalent linkage of the cleaved fragment through its carboxy-terminal group of D414 to \(\epsilon\)-amino group of lysine residue within a neighboring polypeptide chain. We present an NMR resonance assignment of the calcium-free SPM, which displays characteristic features of intrinsically disordered proteins. Non-uniformly sampled 5D HN(CA)CONH, 4D HCBCACON, and HCBCANCO spectra were recorded to resolve poorly dispersed resonance frequencies of the disordered protein and 91 % of SPM residues were unambiguously assigned. Analysis of the chemical shifts revealed that two regions of the intrinsically disordered SPM (A95–S101 and R120–I127) have a tendency to form a helical structure, whereas the residues P1–D7 and G36–A40 have the propensity to adopt a \(\beta\)-structure.
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