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The folding process of acylphosphatase from Escherichia coli is remarkably accelerated by the presence of a disulfide bond
Authors:Parrini Claudia  Bemporad Francesco  Baroncelli Alessio  Gianni Stefano  Travaglini-Allocatelli Carlo  Kohn Jonathan E  Ramazzotti Matteo  Chiti Fabrizio  Taddei Niccolò
Institution:1 Dipartimento di Scienze Biochimiche, Università degli Studi di Firenze, Viale Morgagni 50, 50134 Firenze, Italy
2 Istituto di Biologia e Patologia Molecolari, CNR c/o Dipartimento di Scienze Biochimiche, Università di Roma “La Sapienza,” Piazzale A. Moro 5, 00185 Rome, Italy
3 Dipartimento di Scienze Biochimiche “A. Rossi Fanelli,” Università di Roma “La Sapienza,” Piazzale A. Moro 5, 00185 Rome, Italy
4 Department of Bioengineering, University of California, Berkeley, CA 94720, USA
Abstract:The acylphosphatase from Escherichia coli (EcoAcP) is the first AcP so far studied with a disulfide bond. A mutational variant of the enzyme lacking the disulfide bond has been produced by substituting the two cysteine residues with alanine (EcoAcP mutational variant C5A/C49A, mutEcoAcP). The native states of the two protein variants are similar, as shown by far-UV and near-UV circular dichroism and dynamic light-scattering measurements. From unfolding experiments at equilibrium using intrinsic fluorescence and far-UV circular dichroism as probes, EcoAcP shows an increased conformational stability as compared with mutEcoAcP. The wild-type protein folds according to a two-state model with a very fast rate constant (kFH2O = 72,600 s− 1), while mutEcoAcP folds ca 1500-fold slower, via the accumulation of a partially folded species. The correlation between the hydrophobicity of the polypeptide chain and the folding rate, found previously in the AcP-like structural family, is maintained only when considering the mutant but not the wild-type protein, which folds much faster than expected from this correlation. Similarly, the correlation between the relative contact order and the folding rate holds only for mutEcoAcP. The correlation also holds for EcoAcP, provided the relative contact order value is recalculated by considering the disulfide bridge as an alternate path for the backbone to determine the shortest sequence separation between contacting residues. These results indicate that the presence of a disulfide bond in a protein is an important determinant of the folding rate and allows its contribution to be determined in quantitative terms.
Keywords:AcP  acylphosphatase  AcPDro2  AcP from Drosophila melanogaster  ANS  8-anilino-naphthalene sulfonic acid  CD  circular dichroism  ctAcP  common-type AcP  DLS  dynamic light scattering  EcoAcP  AcP from Escherichia coli  GdnHCl  guanidinium hydrochloride  HypF-N  N-terminal domain of HypF from Escherichia coli  mAcP  human muscle AcP  mutEcoAcP  EcoAcP mutational variant C5A/C49A  RCO  relative contact order  SsoAcP  AcP from Sulfolobus solfataricus
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