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Technical note: improved ancient DNA purification for PCR using ion-exchange columns
Authors:Kim Kijeong  Kim Kyung-Yong  Jeon Eunhee  Togloom Ariunaa  Cho Youn-Ock  Lee Min-Soo  Lkhagvasuren Gavaachimed  Choi Jee-Hye  Tumen Dashtseveg  Ja Park Ae  Kim Keun-Cheol  Park Ki-Won  Kim Jae-Hyun  Noh Maengseok  Yoo Kwon-Jong  Lee Kwang-Ho
Institution:Institute for Medical Sciences, Chung-Ang University, Seoul 156-756, South Korea.
Abstract:A novel method of ancient DNA (aDNA) purification was developed using ion-exchange columns to improve PCR-amplifiable DNA extraction from ancient bone samples. Thirteen PCR-resistant ancient bone samples aged 500-3,300 years were tested to extract aDNA using a recently reported, silica-based aDNA extraction method and an ion-exchange column method for the further purification. The PCR success rates of the aDNA extracts were evaluated for the amplification ability of the fragments of mitochondrial DNA, a high-copy DNA, and amelogenin, a low-copy DNA. The results demonstrate that the further purification of silica-based aDNA extracts using ion-exchange columns considerably improved PCR amplification. We suggest that the ion-exchange column-based method will be useful for the improvement of PCR-amplifiable aDNA extraction, particularly from the poorly preserved, PCR-resistant, ancient samples.
Keywords:DNA purification  ancient bone  PCR amplification  ion‐exchange columns  PCR inhibitors
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