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A two-dimensional proteome map of maize endosperm
Authors:Méchin Valérie  Balliau Thierry  Château-Joubert Sophie  Davanture Marlène  Langella Olivier  Négroni Luc  Prioul Jean-Louis  Thévenot Claudine  Zivy Michel  Damerval Catherine
Institution:INRA/INA-PG/UPS/CNRS UMR8120, Ferme du Moulon, Gif-sur-Yvette, France.
Abstract:We have established a proteome reference map for maize (Zea mays L.) endosperm by means of two-dimensional gel electrophoresis and protein identification with LC-MS/MS analysis. This investigation focussed on proteins in major spots in a 4-7 pI range and 10-100 kDa M(r) range. Among the 632 protein spots processed, 496 were identified by matching against the NCBInr and ZMtuc-tus databases (using the SEQUEST software). Forty-two per cent of the proteins were identified against maize sequences, 23% against rice sequences and 21% against Arabidopsis sequences. Identified proteins were not only cytoplasmic but also nuclear, mitochondrial or amyloplastic. Metabolic processes, protein destination, protein synthesis, cell rescue, defense, cell death and ageing are the most abundant functional categories, comprising almost half of the 632 proteins analyzed in our study. This proteome map constitutes a powerful tool for physiological studies and is the first step for investigating the maize endosperm development.
Keywords:ACN  acetonitrile  DTT  dithiothreitol  EST  expressed sequence tag  HPLC  high-pressure liquid chromatography  IT  ion trap  MS  mass spectrometry  PDA  piperazine diacrylyl  SB3-10  N-decyl-N  N-dimethyl-3-ammonio-1-propane-sulfonate  SDS  sodium dodecyl sulfate  TCA  tricarboxylic acid cycle  TCEP  tris(2-carboxyethyl)phosphine  TFA  trifluoroacetic acid
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