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FIGENIX: Intelligent automation of genomic annotation: expertise integration in a new software platform
Authors:Email author" target="_blank">Philippe?GouretEmail author  Vérane?Vitiello  Nathalie?Balandraud  André?Gilles  Pierre?Pontarotti  Etienne?GJ?Danchin
Institution:1.Phylogenomics Laboratory. EA 3781 EGEE (Evolution, Genome, Environment),Université de Provence,Marseille Cedex 03,France;2.AFMB-UMR 6098- CNRS - U1 - U2 Glycogenomics and Biomedical Structural Biology Case 932,Marseille cedex 09,France
Abstract:

Background  

Two of the main objectives of the genomic and post-genomic era are to structurally and functionally annotate genomes which consists of detecting genes' position and structure, and inferring their function (as well as of other features of genomes). Structural and functional annotation both require the complex chaining of numerous different software, algorithms and methods under the supervision of a biologist. The automation of these pipelines is necessary to manage huge amounts of data released by sequencing projects. Several pipelines already automate some of these complex chaining but still necessitate an important contribution of biologists for supervising and controlling the results at various steps.
Keywords:
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