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Verdoheme formation in Proteus mirabilis catalase
Authors:Pierre Andreoletti  Jean-Marie Mouesca  Patrice Gouet  Michel Jaquinod  Chantal Capeillère-Blandin  Hélène Marie Jouve
Institution:1. INSERM U866, Dijon, France;2. Centre de Recherche-Biochimie Métabolique et Nutritionnelle (LBMN), Faculté des Sciences Gabriel, Université de Bourgogne, Dijon, France;3. GDR CNRS 2583, Dijon F-21000, France;4. INAC/SCIB/LRM, UMR CEA/Université Joseph Fourier E3, CEA/Grenoble, 38054, Grenoble Cedex 9, France;5. Laboratoire de Bio-Cristallographie (IBCP), 7 passage du Vercors, F-69367, Lyon, Cedex 07, France;6. Laboratoire d''Etude de la Dynamique des Protéomes (EDyP), INSERM, U880, Institut de Recherches en Technologies et Sciences pour le Vivant (iRSTV), CEA, Grenoble, 17 rue des Martyrs, F-38054, Grenoble, France;g Laboratoire de Chimie et Biochimie Pharmacologiques et Toxicologiques, CNRS, UMR-8601, Université Paris 5, France;h IBS, Institut de Biologie Structurale Jean-Pierre Ebel, 41 rue Jules Horowitz, F-38027 Grenoble, CEA, CNRS, Université Joseph Fourier, France
Abstract:

Background

Heme oxidative degradation has been extensively investigated in peroxidases but not in catalases. The verdoheme formation, a product of heme oxidation which inactivates the enzyme, was studied in Proteus mirabilis catalase.

Methods

The verdoheme was generated by adding peracetic acid and analyzed by mass spectrometry and spectrophotometry.

Results

Kinetics follow-up of different catalase reactional intermediates shows that i) the formation of compound I always precedes that of verdoheme, ii) compound III is never observed, iii) the rate of compound II decomposition is not compatible with that of verdoheme formation, and iv) dithiothreitol prevents the verdoheme formation but not that of compound II, whereas NADPH prevents both of them. The formation of verdoheme is strongly inhibited by EDTA but not increased by Fe3+ or Cu2+ salts. The generation of verdoheme is facilitated by the presence of protein radicals as observed in the F194Y mutated catalase. The inability of the inactive variant (H54F) to form verdoheme, indicates that the heme oxidation is fully associated to the enzyme catalysis.

Conclusion

These data, taken together, strongly suggest that the verdoheme formation pathway originates from compound I rather than from compound II.

General significance

The autocatalytic verdoheme formation is likely to occur in vivo.
Keywords:PMC  Proteus mirabilis catalase  PR  peroxide resistant  Cpd  catalase compound  VSC  Vibrio salmonicida catalase  BLC  bovine liver catalase  HEC  human erythrocyte catalase  SCA  Saccharomyces cerevisiae catalase A  HRP  horseradish peroxidase  SOD  superoxide dismutase  DTT  1  4-dithio-dl-threitol  IPTG  isopropyl-1-thio-β-d-galactopyranoside  peracetic acid  peroxoacetic acid  P723  pigment of PMC corresponding to an absorbance peak at 723   nm appearing when verdoheme is formed into the protein  Tris&ndash  HCl  tris(hydroxymethyl)aminomethane hydrochloride  NADPH  β-nicotinamide adenine dinucleotide phosphate  reduced form  NADP+  β-nicotinamide adenine dinucleotide phosphate  oxidized form  NADPCl  monochlorinated (chlorine atom at C5 and hydroxy at C6 position) NADPH  β-NMNH  β-nicotinamide mononucleotide  reduced form  EDTA  ethylenediamine-tetraacetic acid  rms  root mean square  Rz  A406   nm/A280   nm  Reinheitszahl index  SDS-PAGE  sodium dodecyl sufate-polyacrylamide gel electrophoresis
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