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炭样小单孢菌中抗生素生物合成相关蛋白的筛选
引用本文:陈娟,杨慧林,黄运红,龙中儿.炭样小单孢菌中抗生素生物合成相关蛋白的筛选[J].中国生物工程杂志,2016,36(7):55-63.
作者姓名:陈娟  杨慧林  黄运红  龙中儿
作者单位:江西师范大学生命科学学院 南昌 330022
基金项目:国家自然科学基金(31160029,31360018),江西省自然科学基金(20132BAB204007,20161BAB204174)资助项目
摘    要:目的:筛选一株具有广谱抗菌活性的炭样小单孢菌JXNU-1中核苷类抗生素生物合成相关蛋白。方法:通过iTRAQ定量蛋白质组学技术对JXNU-1菌体生长期(36h)和产物合成期(108h)的差异蛋白进行鉴定和功能分析。结果:基于iTRAQ定量蛋白质组学技术共鉴定出炭样小单孢菌总蛋白质2390个,差异表达蛋白172个,在产物合成期(108h)表达上调76个、表达下调96个。通过蛋白GO和COG注释等功能分析,筛选出12个与抗生素合成密切相关蛋白和5个生物合成基因簇。结论:利用iTRAQ技术筛选出炭样小单孢菌JXNU-1的抗生素合成相关蛋白,为阐明该抗生素的生物合成机制奠定实验依据。

关 键 词:蛋白质组学  生物合成途径  基因簇  炭样小单孢菌  抗生素  
收稿时间:2016-01-27

Screening of the Protein Related to Antibiotics Biosynthesis in Micromonospora carbonacea JXNU-1
CHEN Juan,YANG Hui-lin,HUANG Yun-hong,LONG Zhong-er.Screening of the Protein Related to Antibiotics Biosynthesis in Micromonospora carbonacea JXNU-1[J].China Biotechnology,2016,36(7):55-63.
Authors:CHEN Juan  YANG Hui-lin  HUANG Yun-hong  LONG Zhong-er
Abstract:Objective:To screen the protein related to antibiotics biosynthesis in Micromonospora carbonacea JXNU-1 with broad-spectrum antimicrobial activity. Methods:iTRAQ was used to analyze the differentially expressed proteins between the time of antibiotics secretion/non-secretion in M.carbonacea JXNU-1. Results:A total of 2 390 proteins were identified using iTRAQ, and 172 proteins were differentially expressed during the antibiotics secretion time in M.carbonacea JXNU-1, including 76 up-regulated and 96 down-regulated. Twelve proteins and five gene clusters closely related to biosynthesis of antibiotics were screened based on the functional analysis of the differentially expressed proteins with GO and COG, annotation. Conclusion:The proteins related to antibiotics biosynthesis in M.carbonacea JXNU-1 have been screened based on iTRAQ, it could provide the theoretical basis for revealing the mechanism of antibiotics biosynthesis in M.carbonacea JXNU-1.
Keywords:Antibiotic  Micromonospora carbonacea  Biosynthetic pathway  Gene cluster  Proteomics  
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