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人二氢乳清酸脱氢酶蛋白的表达、纯化及其与新型抑制剂的晶体结构
引用本文:任小利,孟江平,崔莉莎,杨兵,李洪林,朱丽丽,易莎.人二氢乳清酸脱氢酶蛋白的表达、纯化及其与新型抑制剂的晶体结构[J].中国生物化学与分子生物学报,2019,35(7):786-793.
作者姓名:任小利  孟江平  崔莉莎  杨兵  李洪林  朱丽丽  易莎
作者单位:(1)重庆化工职业学院环境与质量检测学院食品药品教研室,重庆 401228; 2) 重庆文理学院创新靶向药物国际研究院药物合成教研室,重庆 402160;3) 华东理工大学药学院生物信息学教研室,上海 200237)
基金项目:重庆化工职业学院科技重点资助项目(No.HZY2018-KJ01)和重庆市永川区自然科学基金项目(No.Ycstc2016nc5001)资助
摘    要:人二氢乳清酸脱氢酶(human dihydroorotate dehydrogenase, hDHODH)是催化嘧啶从头合成途径的一个关键酶。近年来,多种研究表明,抑制该酶可缓解类风湿性关节炎的症状。但该酶的抑制剂甚少,寻找该酶的高效抑制剂具有重要意义。本研究利用PCR技术扩增hDHODH基因,构建重组质粒pET-19b-hDHODH,并在大肠杆菌(Escherichia coli, E.coli ) BL21(DE3)中表达,获得可溶性蛋白质。用Ni2+-NTA亲和层析柱对蛋白质进行纯化,获得较高(90%)纯度的hDHODH蛋白,将蛋白质与抑制剂3-(5-乙硫基)-1H-1, 2, 4-三氮唑-3-)苯甲酸和底物DHO混合孵育。用Hampton试剂盒初筛晶体并用棋盘法进行优化,获得晶形完美、衍射能力很强的hDHODH蛋白复合物单晶。用X射线衍射晶体,用CCP4、Coot软件解析结构,获得hDHODH蛋白复合物晶体结构。从解析的结构中可以看出,抑制剂与蛋白质的吻合度非常高,且抑制剂通过亲水的羧基端与蛋白质356位和147位的酪氨酸形成氢键网络。抑制剂的5元环与蛋白质359位的亮氨酸和360位的苏氨酸相互作用,使抑制剂与蛋白质牢固结合。该复合物晶体结构的顺利解析,将为开发新型特异性抗类风湿性关节炎药物提供重要基础。

关 键 词:类风湿性关节炎  人二氢乳清酸脱氢酶  蛋白质表达纯化  复合物晶体培养  结构解析  
收稿时间:2019-02-20

Expression and Purification of Human Dihydroorotate Dehydrogenase and Its Crystal Structure with New Inhibitor
REN Xiao-Li,MENG Jiang-Ping,CUI Li-Sha YANG Bing,LI Hong-Lin,ZHU Li-Li,YI Sha.Expression and Purification of Human Dihydroorotate Dehydrogenase and Its Crystal Structure with New Inhibitor[J].Chinese Journal of Biochemistry and Molecular Biology,2019,35(7):786-793.
Authors:REN Xiao-Li  MENG Jiang-Ping  CUI Li-Sha YANG Bing  LI Hong-Lin  ZHU Li-Li  YI Sha
Abstract:Human dihydroorotate dehydrogenase(hDHODH)is a key enzyme that catalyzes the de novo pyrimidine biosynthesis. Recent studies have shown that inhibition of the enzyme can relieve the symptoms of rheumatoid arthritis. Currently there are few inhibitors of the enzyme, so it is of great significance to find an efficient inhibitor of the enzyme. In this study, the hDHODH gene was amplified by PCR. The recombinant plasmid pET-19b-hDHODH was constructed and expressed in Escherichia coli (E.coli) BL21 (DE3) to produce soluble proteins. The protein was purified by Ni 2+-NTA affinity chromatography to obtain high purity (90%)hDHODH proteins. The hDHODH protein and inhibitor 3-(5-(ethylthio)-1H-1,2,4-triazol-3-yl) benzoic acid were mixed and incubated with substrate DHO. The crystal was screened by the Hampton kit and optimized by the chessboard method to obtain a hDHODH protein co-crystal with a perfect crystal shape and strong diffraction ability. The crystal structure was studied by X-ray diffraction, and the structure were analyzed by CCP4 and Coot softwares. Based on the structural analysis, it can be seen that the inhibitor has a very high affinity with protein. The inhibitor formed a hydrogen bond network with the protein at Tyr356 and Tyr147 through the hydrophilic carboxyl terminus and the five-membered ring of the inhibitor interacted with Leu359 and Thr360 of the protein, making the inhibitor firmly bind to the protein. The structural analysis of hDHODH complex crystallization provided an important basis for the development of new specific anti-rheumatoid arthritis drugs.
Keywords:rheumatoid arthritis(RA)  human dihydroorotate dehydrogenase(hDHODH)  protein expression and purification  complex crystallization  structure analysis  
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