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麻疯树Jc-Tctp1基因的同源性分析及时空表达模式鉴定
引用本文:林莎,高帆,罗洪,牛蓓,林颖,秦小波,徐莺,陈放.麻疯树Jc-Tctp1基因的同源性分析及时空表达模式鉴定[J].中国生物化学与分子生物学报,2008,24(8):727-734.
作者姓名:林莎  高帆  罗洪  牛蓓  林颖  秦小波  徐莺  陈放
作者单位:四川大学生命科学院,成都
摘    要:从麻疯树胚乳cDNA文库中获得了翻译调节肿瘤蛋白(translationally controlled tumor protein, TCTP)cDNA序列,命名为Jc-Tctp1(GenBank登录号为EF091818).该序列全长1 410 bp,开放阅读框由507个碱基组成.Jc-Tctp1编码的推测蛋白产物含有168个氨基酸残基,该蛋白具有典型的TCTP蛋白特点:由3个α螺旋组成α螺旋核心、4个β片层结构构成β片层核心,及微管结合结构域(MTB)和钙结合结构域(CaB).其推测氨基酸序列与巴西橡胶树(Hevea brasiliensis)、油棕(Elaeis guineensis)、大豆(Glycine max)、水稻(Oryza sativa,japonica cultivar-group)、黑杨(Populus trichocarpa)、番茄(Lycopersicon esculentum)、西加云杉(Picea sitchensis)、拟南芥(Arabidopsis thaliana)以及玉米(Zea may)的TCTP同源性依次为93 %、90 %、85 %、84 %、85 %、84 %、77 %、80 %和77 %.经构建含Jc-TCTP1在内的植物TCTP蛋白分子进化树分析,发现单子叶植物并未按照其生物学分类的地位出现聚合.用半定量RT-PCR研究Jc-Tctp1基因的表达模式,结果显示,其表达在转录水平上具有一定的组织和时间特异性,茎、Ⅰ期胚乳、胚中最为丰富,而在Ⅱ期胚乳和花中表达最弱.

关 键 词:关键词麻疯树  翻译调节肿瘤蛋白  生物信息学分析  
收稿时间:2008-1-9

Sequencing and Expression of Translationally Controlled Tumor Protein (TCTP) of Jatropha curcas L.
LIN Sha,GAO Fan,LUO Hong,NIU Bei,LIN Ying,QIN Xiao Bo,XU Ying,CHEN Fang.Sequencing and Expression of Translationally Controlled Tumor Protein (TCTP) of Jatropha curcas L.[J].Chinese Journal of Biochemistry and Molecular Biology,2008,24(8):727-734.
Authors:LIN Sha  GAO Fan  LUO Hong  NIU Bei  LIN Ying  QIN Xiao Bo  XU Ying  CHEN Fang
Institution:CollegeofLifeSciences,SichuanUniversity,Chengdu610064,China
Abstract:The full-length cDNA encoding a translationally controlled tumor protein (TCTP) has been isolated from cDNA library of Jatropha curcas L, denoted as Jc-Tctp1with GenBank accession number EF091818. The Jc-Tctp1 is 1 410 bp in length that contains a 507 bp open reading frame (ORF) encoding a putative protein of 168 amino acid residures. The predicted structure of Jc-TCTP1 appeared to be consist of an α-helical core and a β-sheet core, which are composed of 3 major α-helices and 4 major β-sheets , respectively. A homologous microtubule binding (MTB) domain as well as a calcium binding (CaB) domain. can also be identified from the predictions. The Jc-TCTP1 amino acid sequence is highly homologous to other TCTPs, such as from Hevea brasiliensis (93 %), Elaeis guineensis (90 %), Glycine max (85 %), Oryza sativa (84 %), Populus trichocarpa (85 %), Lycopersicon esculentum (84 %), Picea sitchensis (77 %), Arabidopsis thaliana (80 %) and Zea may (77%). The semi-quantitative RT-PCR results have shown that Jc-Tctp1 expression was the highest in the stem, endosperm atⅠstage and embryo of Jatropha curcas tissues, and the lowest in the endosperm at stage Ⅱ and flower, demonstrating a pattern of temporal and spatial specific expression. This might related to certain divergence in the phylogenic analysis of plant TCTP sequences where the selected monocots were not forming a separate cluster.
Keywords:Jatropha curcas L    translationally controlled tumor
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