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Gramene: a resource for comparative grass genomics
Authors:Doreen Ware  Pankaj Jaiswal  Junjian Ni  Xiaokang Pan  Kuan Chang  Kenneth Clark  Leonid Teytelman  Steve Schmidt  Wei Zhao  Samuel Cartinhour  Susan McCouch  and Lincoln Stein
Abstract:Gramene (http://www.gramene.org) is a comparative genome mapping database for grasses and a community resource for rice. Rice, in addition to being an economically important crop, is also a model monocot for understanding other agronomically important grass genomes. Gramene replaces the existing AceDB database ‘RiceGenes’ with a relational database based on Oracle. Gramene provides curated and integrative information about maps, sequence, genes, genetic markers, mutants, QTLs, controlled vocabularies and publications. Its aims are to use the rice genetic, physical and sequence maps as fundamental organizing units, to provide a common denominator for moving from one crop grass to another and is to serve as a portal for interconnecting with other web-based crop grass resources. This paper describes the initial steps we have taken towards realizing these goals.
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