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Multiplexed quantification of 63 proteins in human urine by multiple reaction monitoring-based mass spectrometry for discovery of potential bladder cancer biomarkers
Authors:Chen Yi-Ting  Chen Hsiao-Wei  Domanski Dominik  Smith Derek S  Liang Kung-Hao  Wu Chih-Ching  Chen Chien-Lun  Chung Ting  Chen Min-Chi  Chang Yu-Sun  Parker Carol E  Borchers Christoph H  Yu Jau-Song
Institution:Molecular Medicine Research Center, Chang Gung University, Taoyuan 333, Taiwan.
Abstract:Three common urological diseases are bladder cancer, urinary tract infection, and hematuria. Seventeen bladder cancer biomarkers were previously discovered using iTRAQ - these findings were verified by MRM-MS in this current study. Urine samples from 156 patients with hernia (n=57, control), bladder cancer (n=76), or urinary tract infection/hematuria (n=23) were collected and subjected to multiplexed LC-MRM/MS to determine the concentrations of 63 proteins that are normally considered to be plasma proteins, but which include proteins found in our earlier iTRAQ study. Sixty-five stable isotope-labeled standard proteotypic peptides were used as internal standards for 63 targeted proteins. Twelve proteins showed higher concentrations in the bladder cancer group than in the hernia and the urinary tract infection/hematuria groups, and thus represent potential urinary biomarkers for detection of bladder cancer. Prothrombin had the highest AUC (0.796), with 71.1% sensitivity and 75.0% specificity for differentiating bladder cancer (n=76) from non-cancerous (n=80) patients. The multiplexed MRM-MS data was used to generate a six-peptide marker panel. This six-peptide panel (afamin, adiponectin, complement C4 gamma chain, apolipoprotein A-II precursor, ceruloplasmin, and prothrombin) can discriminate bladder cancer subjects from non-cancerous subjects with an AUC of 0.814, with a 76.3% positive predictive value, and a 77.5% negative predictive value. This article is part of a Special Section entitled: Understanding genome regulation and genetic diversity by mass spectrometry.
Keywords:APOA1  apolipoprotein A-I  APOA2  apolipoprotein A-II  CV  coefficient of variation  HgEs  high grade/early stage bladder cancer  HgAs  high grade/advanced stage bladder cancer  HU  hematuria  LC–MS/MS  liquid chromatography tandem mass spectrometry  LgEs  low grade/early stage bladder cancer  LOD  limit of detection  LOQ  limit of quantitation  MRM  multiple reaction monitoring  NT  non-tumor  SIS  stable isotope-labeled standard  UTI  urinary tract infection  XIC  extracted ion chromatogram
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