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Microarray profiling of HepG2 cells ectopically expressing NDRG2
Authors:Liu Xuewu  Niu Tianshui  Liu Xingping  Hou Wugang  Zhang Jing  Yao Libo
Institution:Department of Biochemistry and Molecular Biology, The Fourth Military Medical University, Xi'an, People's Republic of China.
Abstract:Previous studies have demonstrated that N-Myc downstream-regulated gene 2 (NDRG2) is a tumor suppressor that is downregulated in many human cancers and when overexpressed, can inhibit tumor growth and metastasis. However, its molecular function, its modulatory targets, and signaling pathways associated with it remain unclear. Here, in an effort to identify the genes modulated by NDRG2 expression, a microarray study was conducted to detect the expression profile of HepG2 cells overexpressing NDRG2 or LacZ. Gene Ontology (GO) biological process analysis revealed that genes related to G protein signaling pathway were upregulated. Five of them were selected and verified by real-time PCR. Gene sets related to M phase of cell cycle were downregulated. This was in agreement with cell cycle analysis. Signaling pathway analysis demonstrated apparent augmented hematopoietic cell lineage pathway and cell adhesion, but reduced glycosylphosphatidylinositol (GPI)-anchor biosynthesis, protein degradation and SNARE interactions. Furthermore, through motif analysis and experimental validation, we found that the p38 phosphorylation can be increased by NDRG2. Our research provides the molecular basis for understanding the role of NDRG2 in tumor cells and raises interesting questions about its mechanisms and potential use in cancer therapy.
Keywords:NDRG2  N-myc downstream-regulated gene 2  GO  Gene Ontology  PCR  Polymerase chain reaction  GPI  Glycosylphosphatidylinositol  ABH  α/β-hydrolase  NGF  Nerve growth factor  MOI  Multiplicity of infection  PSMF  Phenylmethylsulfonyl fluoride  SAPK/JNK  Stress-activated protein kinase/c-Jun NH2-terminal kinase  ERK1/2  Extracellular signal-regulated protein kinases 1 and 2  PBS  Phosphate buffered saline  GSEA  Gene set enrichment analysis  PNH  Paroxysmal nocturnal hemoglobinuria  AD  Alzheimer's disease
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