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Analysis of quantitative trait loci affecting chlorophyll content of rice leaves in a double haploid population and two backcross populations
Authors:Gonghao Jiang  Jing Zeng  Yuqing He
Institution:1. National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research and National Center of Crop Molecular Breeding, Huazhong Agricultural University, Wuhan 430070, PR China;2. College of Life Science, Heilongjiang University, Haerbin 150080, China
Abstract:Chlorophyll content, one of the most important physiological parameters related to plant photosynthesis, is usually used to predict yield potential. To map the quantitative trait loci (QTLs) underlying the chlorophyll content of rice leaves, a double haploid (DH) population was developed from an indica/japonica (Zhenshan 97/Wuyujing 2) crossing and two backcross populations were established subsequently by backcrossing DH lines with each of their parents. The contents of chlorophyll a and chlorophyll b were determined by using a spectrophotometer to directly measure the leaf chlorophyll extracts. To determine the leaf chlorophyll retention along with maturation, all measurements were performed on the day of heading and were repeated 30 days later. A total of 60 QTLs were resolved for all the traits using these three populations. These QTLs were distributed on 10 rice chromosomes, except chromosomes 5 and 10; the closer the traits, the more clustering of the QTLs residing on common rice chromosomal regions. In general, the majority of QTLs that specify chlorophyll a content also play a role in determining chlorophyll b content. Strangely, chlorophyll content in this study was found mostly to be lacking or to have a negative correlation with yield. In both backcross F1 populations, overdominant (or underdominant) loci were more important than complete or partially dominant loci for main-effect QTLs and epistatic QTLs, thereby supporting previous findings that overdominant effects are the primary genetic basis for depression in inbreeding and heterosis in rice.
Keywords:a  additive effect  BC  backcross  BCF1  backcross F1  d  dominance  DH  double haploid  E-QTLs  epistatic quantitative trait loci  GF  grain-filling degree  HMP  mid-parental heterosis  ICa  leaf chlorophyll a content at developmental stage I  ICb  leaf chlorophyll b content at developmental stage I  IICa  leaf chlorophyll a content at developmental stage II  IICb  leaf chlorophyll b content at developmental stage II  II/ICa  ratio of IICa to ICa  II/ICb  ratio of IICb to ICb  IISF  SPAD values of the flag leaves measured at 30   days after heading  IISS  SPAD values of the second leaves measured at 30   days after heading  II/ISF  the ratio of IISF to ISF  II/ISS  the ratio of IISS to ISS  ISF  SPAD readings of the flag leaves measured on the day of heading  ISS  SPAD readings of the second leaves measured on the day of heading  KGW  grain weight per 1000 grains  LR  likelihood ratio  LOD  log likelihood value  M-QTLs  main-effect quantitative trait loci  PL  panicle length  QTLs  quantitative trait loci  R2  relative contribution of a genetic component  RIL  recombinant inbred line  SDEN  setting grain density per panicle  SP  spikelet per panicle  SS  seed-setting rate  SSR  simple sequence repeat  TC  testcross  TP  number of tillers per plant  WY  Wuyujing  WYF1  DH   ×     WY  WYHMP  mid-parental heterosis in WYF1  YD  grain yield per plant  ZS  Zhenshan  ZSF1  DH   ×     ZS  ZSHMP  mid-parental heterosis in ZSF1 population
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