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Phylogenetic reconstruction at the species and intraspecies levels in the genus Pisum (L.) (peas) using a histone H1 gene
Authors:Zaytseva Olga O  Bogdanova Vera S  Kosterin Oleg E
Institution:Institute of Cytology and Genetics SB RAS, Acad. Lavrentyev ave. 10, Novosibirsk, Russia.
Abstract:A phylogenetic analysis of the genus Pisum (peas), embracing diverse wild and cultivated forms, which evoke problems with species delimitation, was carried out based on a gene coding for histone H1, a protein that has a long and variable functional C-terminal domain. Phylogenetic trees were reconstructed on the basis of the coding sequence of the gene His5 of H1 subtype 5 in 65 pea accessions. Early separation of a clear-cut wild species Pisum fulvum is well supported, while cultivated species Pisum abyssinicum appears as a small branch within Pisum sativum. Another robust branch within P. sativum includes some wild and almost all cultivated representatives of P. sativum. Other wild representatives form diverse but rather subtle branches. In a subset of accessions, PsbA-trnH chloroplast intergenic spacer was also analysed and found less informative than His5. A number of accessions of cultivated peas from remote regions have a His5 allele of identical sequence, encoding an electrophoretically slow protein product, which earlier attracted attention as likely positively selected in harsh climate conditions. In PsbA-trnH, a 8bp deletion was found, which marks cultivated representatives of P. sativum.
Keywords:Cox1  cytochrome c oxidase subunit I gene  His(2–6)  group of linked pea genes coding for histone H1 subtypes 2–6  His-3  pea histone H1 subtype 3 gene  His5  pea histone H1 subtype 5 gene  ICG  Institute of Cytology and Genetics  IChBFM  Institute of Chemical Biology and Fundamental Medicine  SB RAS  Siberian Branch of Russian Academy of Sciences  ML  maximum likelihood  MP  maximum parsimony  NJ  Neighbour-Joining  PsbA  core protein of photosystem II gene  RbcL  large subunit of ribulose-1  5-bisphosphate carboxylase oxygenase gene  SCA  seed cotyledon albumin gene  SD  standard deviation  trnH  histidine tRNA gene  PsH1b  Pisum sativum histone H1 b gene
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