Novel Glutaredoxin Activity of the Yeast Prion Protein Ure2 Reveals a Native-like Dimer within Fibrils

Ure2 is the protein determinant of the Saccharomyces cerevisiae prion [URE3]. Ure2 has structural similarity to glutathione transferases, protects cells against heavy metal and oxidant toxicity in vivo, and shows glutathione-dependent peroxidase activity in vitro. Here we report that Ure2 (which has no cysteine residues) also shows thiol-disulfide oxidoreductase activity similar to that of glutaredoxin enzymes. This demonstrates that disulfide reductase activity can be independent of the classical glutaredoxin CXXC/CXXS motif or indeed an intrinsic catalytic cysteine residue. The kinetics of the glutaredoxin activity of Ure2 showed positive cooperativity for the substrate glutathione in both the soluble native state and in amyloid-like fibrils, indicating native-like dimeric structure within Ure2 fibrils. Characterization of the glutaredoxin activity of Ure2 sheds light on its ability to protect yeast from heavy metal ion and oxidant toxicity and suggests a role in reversible protein glutathionylation signal transduction. Observation of allosteric enzyme behavior within amyloid-like Ure2 fibrils not only provides insight into the molecular structure of the fibrils but also has implications for the mechanism of [URE3] prion formation.The tripeptide glutathione (GSH)² is abundant in the cell. It plays an important role as a reducing agent in vivo, such as in endogenous free radical scavenging, reversible protein S-glutathionylation, and the reduction of the active sites of enzymes. One major class of enzyme that uses GSH as a reductant is glutaredoxin (GRX), which is a small protein involved in reduction of ribonucleotide reductase for the formation of deoxyribonucleotides for DNA synthesis (1), reduction of 3′-phosphoadenylylsulfate reductase (2) for generation of sulfite, signal transduction, and protection against oxidative stress (3). GRXs are ubiquitous thiol-disulfide oxidoreductases that belong to the thioredoxin superfamily (4). GRXs also show dehydroascorbic acid (DHA) reductase (DHAR) activity (5). Yeast Saccharomyces cerevisiae has at least seven GRXs, which can be divided into two classes according to the number of cysteines in their active site motif: dithiol GRXs with the active site motif CXXC and monothiol GRXs with the motif CXXS (6–9). The dithiol GRXs catalyze protein disulfide reduction using a dithiol mechanism for which both the active site cysteines are essential. On the other hand, both the dithiol and monothiol GRXs can catalyze the reduction of GSH-protein mixed disulfides using a monothiol mechanism that only requires the N-terminal active site cysteine. This reaction and mechanism is important for reversible protein glutathionylation in redox signaling and oxidative stress (10).Glutathione S-transferases (GSTs) are a large versatile family of enzymes with multiple functions, particularly associated with cellular detoxification (11). In terms of overall structure, they belong to the thioredoxin superfamily, like GRX (4). In general, GSTs catalyze the conjugation of reduced GSH to hydrophobic substrates containing an electrophilic atom. In addition, GSTs bind a broad spectrum of ligands and show many other functions. For example, some GSTs show overlapping functions with glutathione-dependent peroxidases (GPxs), which use GSH to reduce hydrogen peroxide and/or organic hydroperoxides and thus are responsible for protection against both endogenous and exogenous oxidant toxicity (11). Interestingly Omega class and Beta class GSTs (such as Escherichia coli GST (EGST)) possess typical GRX activity toward widely used substrates, such as 2-hydroxyethyl disulfide (HEDS) (12–16). These GSTs have an active site cysteine, which is indispensable for GRX activity but not GST activity.The yeast prion protein Ure2 is composed of a disordered protease-sensitive N-terminal prion domain and a compact globular C-terminal domain, which shows high structural similarity to EGST (17). The C-terminal domain of Ure2 can be further structurally divided into two subdomains, the all-α-helix subdomain and the thioredoxin fold subdomain, which shows high structural homology to GRX. Ure2 is involved in the regulation of nitrogen metabolism and resistance to heavy metal ion toxicity (especially cadmium) and oxidative stress in S. cerevisiae (18, 19). In addition, Ure2 shows GPx activity toward both hydrogen peroxide and organic hydroperoxides such as cumene hydroperoxide and tert-butyl hydroperoxide (20). The discovery of the GPx activity of Ure2 (20) provides an explanation for its ability to protect yeast cells from oxidant toxicity (18). However, the reason that ure2Δ yeast cells are hypersensitive to cadmium remains unclear. In general, cadmium ions have a drastic effect on yeast cell growth, and the reasons are complicated. One possible reason for cadmium ion toxicity is that thioltransferases or GRXs can be inhibited by direct binding of cadmium to the two essential cysteine residues present in the thioltransferase active site (21). The inhibition of GRXs leads to complex effects on cell growth. Therefore, we used an in vitro assay to provide a system that allows detailed analysis of the activity of Ure2 and its relationship to that of GRX enzymes. Characterization of the allosteric behavior of the GRX activity of Ure2 revealed that Ure2 forms an active dimer within fibrils. In addition to providing information about the molecular structure of Ure2 fibrils, this also has implications for the molecular mechanism of Ure2 prion formation.