The Proteome Analysis database: a tool for the in silico analysis of whole proteomes |
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| Authors: | Pruess Manuela Fleischmann Wolfgang Kanapin Alexander Karavidopoulou Youla Kersey Paul Kriventseva Evgenia Mittard Virginie Mulder Nicola Phan Isabelle Servant Florence Apweiler Rolf |
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| Institution: | EMBL Outstation, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK. mpr@ebi.ac.uk |
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| Abstract: | The Proteome Analysis database (http://www.ebi.ac.uk/proteome/) has been developed by the Sequence Database Group at EBI utilizing existing resources and providing comparative analysis of the predicted protein coding sequences of the complete genomes of bacteria, archeae and eukaryotes. Three main projects are used, InterPro, CluSTr and GO Slim, to give an overview on families, domains, sites, and functions of the proteins from each of the complete genomes. Complete proteome analysis is available for a total of 89 proteome sets. A specifically designed application enables InterPro proteome comparisons for any one proteome against any other one or more of the proteomes in the database. |
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