| 3D Genome Tuner： Compare Multiple Circular Genomes in a 3D Context |
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| 作者单位： | Qi Wang,Qun Liang(Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, China;Graduate University of Chinese Academy of Sciences, Beijing 100049, China);Xiuqing Zhang(Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, China;Beijing Genomics Institute at Shenzhen, Shenzhen 518083, China) |
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| 基金项目： | supported by the National HighTech R&D Program (863 Program) of China (Grant No. 2006AA02A301) awarded to XZ |
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| 摘 要： | ![]()
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| 关 键 词： | 基因组分析 三维空间 调谐器 多循环 语境 比较基因组学 基因组注释 基于特征 |
3D Genome Tuner:Compare Multiple Circular Genomes in a 3D Context |
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| Qi Wang,,Qun Liang,, Xiuqing Zhang, Beijing Institute of Genomics,Chinese Academy of Sciences,Beijing ,China, Graduate University of Chinese Academy of Sciences,Beijing ,Beijing Genomics Institute at Shenzhen,Shenzhen ,China.. 3D Genome Tuner:Compare Multiple Circular Genomes in a 3D Context[J]. Genomics, proteomics & bioinformatics, 2009, 7(3): 143-146. DOI: 10.1016/S1672-0229(08)60043-1 |
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| Authors: | Qi Wang Qun Liang Xiuqing Zhang Beijing Institute of Genomics Chinese Academy of Sciences Beijing China Graduate University of Chinese Academy of Sciences Beijing Beijing Genomics Institute at Shenzhen Shenzhen China. |
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| Affiliation: | [1]Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, China [2]Graduate University of Chinese Academy of Sciences, Beijing 100049, China [3]Beijing Genomics Institute at Shenzhen, Shenzhen 518083, China |
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| Abstract: | ![]()
Circular genomes, being the largest proportion of sequenced genomes, play an important role in genome analysis. However, traditional 2D circular map only provides an overview and annotations of genome but does not offer feature-based comparison. For remedying these shortcomings, we developed 3D Genome Tuner, a hybrid of circular map and comparative map tools. Its capability of viewing comparisons between multiple circular maps in a 3D space offers great benefits to the study of comparative genomics. The pro... |
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| Keywords: | three dimensional circular map genome browser comparative genomics |
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