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Postglacial population expansion of Dacrydium pectinatum(Podocarpaceae)in Hainan,southern China,based on cpDNA tmL-F nocoding sequence data
Authors:SU Yingjuan  WANG Ting  CHEN Guopei  SUN Yufei  JIANG Yu  DENG Feng  WANG Bosun
Abstract:This study determined the sequences of chloro plast DNA(cpDNA)trnL-F non-coding regions of indiViduals of a tropical coniferous species,Dacrydium pectinatum,collected from 12 natural populations located in Hainan Province,southern China.Sequence length varied from 868 bp to 876 bp,indicating length polymorphism.Base composition in the sequences was high in A+T content between 64.17% and 64.95%.and no recombination event occurred (Rm=0).Thirty haplotypes were identified based on statistical parsimony algorithm by running the TCS program.Populations of D.pectinatum in Hainan were lacking genetic differentiation.Such a deduction was supported by the observed FST values(0.00),AMOVA(24.17% of molecular variance attributed to difference among populations,P>0.05),high values of Nm(ranging from 1.92 to 2.50)and the branching structure in neighbor-joining(NJ)tree conin the TCS network of trnL-F haplotypes,and majority of the haplotypes coalesced near the tips in NJ tree.Gene genealogies of cpDNA haplotypes proposed a recent population expansion of D.pectinatum in Hainan,which was further supported by the results from Tajima's D test and mismatch distribution analysis.Our data.in COnjunction with geological and palynological evidences,showed that in the Holocene,due to global warming,refugee populations of D.pectinatum in Hainan might experience a range expansion.
Keywords:Dacrydium pectinatum de Laubenfels  cpDNA trnL-F noncoding sequence  haplotype  genetic differentiation  population expansion
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