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Genome-wide identification of specific oligonucleotides using artificial neural network and computational genomic analysis
Authors:Chun-Chi Liu  Chin-Chung Lin  Ker-Chau Li  Wen-Shyen E Chen  Jiun-Ching Chen  Ming-Te Yang  Pan-Chyr Yang  Pei-Chun Chang  Jeremy JW Chen
Institution:(1) Department of Computer Science, National Chung-Hsing University, Taichung, Taiwan, ROC;(2) Institute of Biomedical Sciences, National Chung-Hsing University, Taichung, Taiwan, ROC;(3) Institute of Statistical Science, Academia Sinica, Taipei, Taiwan, ROC;(4) Institute of Molecular Biology, National Chung-Hsing University, Taichung, Taiwan, ROC;(5) NTU Center for Genomic Medicine, National Taiwan University College of Medicine, Taipei, Taiwan, ROC;(6) Departments of Biotechnology and Bioinformatics, Asia University, Taichung, Taiwan, ROC
Abstract:

Background  

Genome-wide identification of specific oligonucleotides (oligos) is a computationally-intensive task and is a requirement for designing microarray probes, primers, and siRNAs. An artificial neural network (ANN) is a machine learning technique that can effectively process complex and high noise data. Here, ANNs are applied to process the unique subsequence distribution for prediction of specific oligos.
Keywords:
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