Tackling Quantitation: A Report on the Annual Spring Workshop of the HUPO‐PSI 28–30 March 2010, Seoul,South Korea |
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| Authors: | Sandra Orchard Andrew Jones Juan‐Pablo Albar Sang Yun Cho Kyung‐Hoon Kwon Cheolju Lee Henning Hermjakob |
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| Affiliation: | 1. EMBL Outstation – European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK;2. Department of Comparative Molecular Medicine, School of Veterinary Science, University of Liverpool, Liverpool, UK;3. ProteoRed Proteomics Facility, National Center for Biotechnology, Consejo Superior de Investigaciones Científicas, Madrid, Spain;4. Division of Biobank for Health Sciences, Korea National Institute of Health, Korea Centers for Disease Control and Prevention, Seoul, Korea;5. Korea Basic Science Institute, Ochang, Korea;6. Korea Institute of Science and Technology, Seoul, Korea |
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| Abstract: | The annual Spring Workshop of the HUPO‐PSI took place in Korea, where the Mass Spectrometry and Protein Separations groups joined forces to tackle the issue of the consistent reporting of quantitative proteomic data generated by mass‐spectrometry‐based technologies. A preliminary mzQuantML schema was drafted which, when completed and tested, will complement the existing mzIdentML schema for reporting protein identifications. The Molecular Interactions group concentrated on the implementations of the PSICQUIC (PSI Common Query InterfaCe) service that allows users to simultaneously query interaction data across multiple participating resources. Work was also undertaken to update the MIAPE guidelines, in response to feedback from the editors of a number of proteomic journals. |
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| Keywords: | Data standardization Human Proteome Organization Proteomics Standards Initiative |
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