| DNA序列的甲基化特征提取软件 |
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| 引用本文： | 戴胜冬,杨昆,顾靓,王路路.DNA序列的甲基化特征提取软件[J].生物信息学,2012,10(1):5-7. |
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| 作者姓名： | 戴胜冬 杨昆 顾靓 王路路 |
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| 作者单位： | 杭州电子科技大学计算机学院,浙江杭州,310018 |
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| 基金项目： | 国家自然科学基金（No.60903086） |
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| 摘 要： | 提取(量化)特征是DNA甲基化状态预测中的一个关键步骤,然而不同的方法所使用的特征并不相同,特征量化的具体过程计算繁琐。本文集成文献中的重要特征,设计并实现了DNA序列的特征提取软件工具。该软件封装了特征的计算过程,可以方便地批量计算目标序列的相关特征,为后续的数据分析和挖掘提供便利。
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| 关 键 词： | DNA甲基化 特征提取 CpG岛 BLAT 软件 |
Sofware for extracting the features of DNA methylation |
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| DAI Sheng-dong
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YANG Kun
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GU Liang
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WANG Lu-lu.Sofware for extracting the features of DNA methylation[J].China Journal of Bioinformation,2012,10(1):5-7. |
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| Authors: | DAI Sheng-dong YANG Kun GU Liang WANG Lu-lu |
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| Institution: | (School of computer,Hangzhou Dianzi University,Hangzhou 310018,China) |
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| Abstract: | Extracting the feature is one important step for predicting the methylation status of DNA sequence.However,every proposed method was just devised on some features and the calculation process of quantitative feature is complicated.In this paper,we collected the features used in published papers,then designed and implemented the software of extracting these features for DNA sequence.This software can easily process a batch of target sequences and facilitate the subsequent data analysis and mining. |
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| Keywords: | DNA methylation feature extraction CpG island BLAT Software |
| 本文献已被 CNKI 维普 万方数据 等数据库收录！ |
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