| Abstract: | The St. Johns River, a 300‐mile riverine and estuarine system located along the north‐eastern coastline of Florida, has undergone extensive eutrophication through point and nonpoint source nutrient inputs. Moreover, recent reports of sudden fish kills and a high incidence of fish with lesions suggest the potential for harmful algal blooms. As part of a NOAA‐funded project involving the characterization of water quality parameters in relation to water inflows and nutrient inputs and the development of species‐specific markers/probes for instrumental‐based monitoring efforts, we used primer‐based multivariate analyses to examine the relationship between abiotic variables and both total and phylogenetic‐group chlorophyll a concentrations (derived from photopigments and ChemTax matrix factorization of diagnostic carotenoids) during 2001. Seven sampling sites (identified through principle components ordination of physical/chemical parameters as ranging from oligo‐ to mesohaline) were sampled intensively over 2‐week periods on a seasonal basis. Chlorophyll a concentrations typically ranged from 5 to 35 µg/L with the greatest concentrations occurring at the oligohaline sites. Phytoplankton assemblages were dominated by diatoms, cryptophytes, and cyanobacteria, and together typically comprised up to 90% of the total chlorophyll a. Temporal variability in phytoplankton assemblages followed seasonal trends impacted by meteorological and hydrological forcing. Spatial variability in phylogenetic‐group abundance (illustrated through multidimensional scalar ordination of sample dissimilarity) was dramatic and associated with differences in abiotic variables along the estuarine gradient. |
