No association of functional variant in pri-miR-218 and risk of congenital heart disease in a Chinese population |
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Authors: | Xiaobo Gao Liping Yang Yan Ma Juhua Yang Guican Zhang Guoying Huang Qiuyu Huang Liangwan Chen Fangmeng Fu Yandan Chen Dongmei Su Yi Dong Xu Ma Cailing Lu Xiaozhong Peng |
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Affiliation: | 1. Department of Genetics, National Research Institute for Family Planning, Beijing, China;2. Graduate School of Peking Union Medical College, Beijing, China;3. Department of Cardiovascular Surgery, Union Hospital, Fujian Medical University, Fuzhou, China;4. Biomedical Engineering Center, Fujian Medical University, Fuzhou, China;5. Children''s Hospital of Fudan University, Shanghai, China;6. Department of General Surgery, Affiliated Union Hospital of Fujian Medical University, Fuzhou, China;g The National Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences and Peking Union Medical College, Chinese National Human Genome Center at Beijing, Beijing, China |
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Abstract: | BackgroundMiR-218 plays an important role in heart development in zebrafish. pri-miR-218 rs11134527 variant is associated with cervical cancer carcinogenesis. Therefore, we hypothesized that single nucleotide polymorphism (SNPs) in pri-miR-218 might influence susceptibility to sporadic congenital heart disease (CHD).Methods and resultsWe conducted a case–control study of CHD in a Chinese population to test our hypothesis by sequencing and genotyping pri-miR-218 in 1116 CHD cases and 1219 non-CHD controls. We identified one SNP rs11134527 located in pri-miR-218 sequence. Logistic regression analyses showed that there was no significant association in genotype and allele frequencies of pri-miR-218 rs11134527 A/G polymorphism between CHD cases in overall or various subtypes and the control group. However, real-time PCR analysis showed that rs11134527 allele G significantly increased mature miR-218 expression. In vitro binding assays further revealed that the rs11134527 variant affects miR-218-mediated regulation of Robo1.ConclusionsThis is the first study to investigate the relationship between miR-218 and CHD cases. Our results demonstrate that the functional variant rs11134527 in pri-miR-218 has no major role in genetic susceptibility to sporadic CHD, at least in the population studied here. |
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Keywords: | CHD, Congenital heart disease SNP, single nucleotide polymorphism ASD, atrial septal defects VSD, ventricular septal defects TOF, Tetralogy of Fallot PDA, patent ductus arteriosus MAF, minor allele frequency FAM, 6-carboxyfluoroscein BHQ-1, Black Hole Quencher 1 UTR, Untranslated Regions DMEM, Dulbecco's modified Eagle's medium FBS, fetal bovine serum ORs, odds ratios CIs, confidence intervals SPSS, statistical package for social sciences NCBI, National Center For Biotechnology Information |
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