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No association of functional variant in pri-miR-218 and risk of congenital heart disease in a Chinese population
Authors:Xiaobo Gao  Liping Yang  Yan Ma  Juhua Yang  Guican Zhang  Guoying Huang  Qiuyu Huang  Liangwan Chen  Fangmeng Fu  Yandan Chen  Dongmei Su  Yi Dong  Xu Ma  Cailing Lu  Xiaozhong Peng
Affiliation:1. Department of Genetics, National Research Institute for Family Planning, Beijing, China;2. Graduate School of Peking Union Medical College, Beijing, China;3. Department of Cardiovascular Surgery, Union Hospital, Fujian Medical University, Fuzhou, China;4. Biomedical Engineering Center, Fujian Medical University, Fuzhou, China;5. Children''s Hospital of Fudan University, Shanghai, China;6. Department of General Surgery, Affiliated Union Hospital of Fujian Medical University, Fuzhou, China;g The National Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences and Peking Union Medical College, Chinese National Human Genome Center at Beijing, Beijing, China
Abstract:

Background

MiR-218 plays an important role in heart development in zebrafish. pri-miR-218 rs11134527 variant is associated with cervical cancer carcinogenesis. Therefore, we hypothesized that single nucleotide polymorphism (SNPs) in pri-miR-218 might influence susceptibility to sporadic congenital heart disease (CHD).

Methods and results

We conducted a case–control study of CHD in a Chinese population to test our hypothesis by sequencing and genotyping pri-miR-218 in 1116 CHD cases and 1219 non-CHD controls. We identified one SNP rs11134527 located in pri-miR-218 sequence. Logistic regression analyses showed that there was no significant association in genotype and allele frequencies of pri-miR-218 rs11134527 A/G polymorphism between CHD cases in overall or various subtypes and the control group. However, real-time PCR analysis showed that rs11134527 allele G significantly increased mature miR-218 expression. In vitro binding assays further revealed that the rs11134527 variant affects miR-218-mediated regulation of Robo1.

Conclusions

This is the first study to investigate the relationship between miR-218 and CHD cases. Our results demonstrate that the functional variant rs11134527 in pri-miR-218 has no major role in genetic susceptibility to sporadic CHD, at least in the population studied here.
Keywords:CHD, Congenital heart disease   SNP, single nucleotide polymorphism   ASD, atrial septal defects   VSD, ventricular septal defects   TOF, Tetralogy of Fallot   PDA, patent ductus arteriosus   MAF, minor allele frequency   FAM, 6-carboxyfluoroscein   BHQ-1, Black Hole Quencher 1   UTR, Untranslated Regions   DMEM, Dulbecco's modified Eagle's medium   FBS, fetal bovine serum   ORs, odds ratios   CIs, confidence intervals   SPSS, statistical package for social sciences   NCBI, National Center For Biotechnology Information
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