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Automated Microarray Image Analysis Toolbox for MATLAB |
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| Authors: | White Amanda M Daly Don S Willse Alan R Protic Miroslava Chandler Darrell P |
| Affiliation: | 1Statistical Sciences, Pacific Northwest National Laboratory Richland, WA 99352, USA 2Biochip Technology Center, Argonne National Laboratory Argonne, IL 60439, USA |
| Abstract: | Summary: The Automated Microarray Image Analysis (AMIA) Toolboxfor MATLAB is a flexible, open-source, microarray image analysistool that allows the user to customize analyses of microarrayimage sets. This tool provides several methods to identify andquantify spot statistics, as well as extensive diagnostic statisticsand images to evaluate data quality and array processing. Theopen, modular nature of AMIA provides access to implementationdetails and encourages modification and extension of AMIA'scapabilities. Availability: The AMIA Toolbox is freely available at http://www.pnl.gov/statistics/amia.The AMIA Toolbox requires MATLAB 6.5 (R13) (MathWorks, Inc.Natick, MA), as well as the Statistics Toolbox 4.1 and ImageProcessing Toolbox 4.1 for MATLAB or more recentversions. Contact: amanda.white{at}pnl.gov |
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