Desolvation shell of hydrogen bonds in folded proteins,protein complexes and folding pathways |
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Authors: | Fernández Ariel |
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Affiliation: | Institute for Biophysical Dynamics, Cummings Life Science Center #439D, The University of Chicago, 920 East 58th Street, Chicago, IL 60637, USA. ariel@uchicago.edu |
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Abstract: | A few backbone hydrogen bonds (HBS) in native protein folds are poorly protected from water attack: their desolvation shell contains an inordinately low number of hydrophobic residues. Thus, an approach by solvent-structuring moieties of a binding partner should contribute significantly to enhance their stability. This effect represents an important factor in the site specificity inherent to protein binding, as inferred from a strong correlation between poorly desolvated HBs and binding sites. The desolvation shells were also examined in a dynamic context: except for a few singular under-protected bonds, the size of desolvation shells is preserved along the folding trajectory. |
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