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Avanti lipid tools: Connecting lipids,technology, and cell biology
Authors:Kacee H. Sims  Ewan M. Tytler  John Tipton  Kasey L. Hill  Stephen W. Burgess  Walter A. Shaw
Affiliation:Avanti Polar Lipids, Inc., 700 Industrial Park Drive, Alabaster, Al 35007, USA
Abstract:Lipid research is challenging owing to the complexity and diversity of the lipidome. Here we review a set of experimental tools developed for the seasoned lipid researcher, as well as, those who are new to the field of lipid research. Novel tools for probing protein–lipid interactions, applications for lipid binding antibodies, enhanced systems for the cellular delivery of lipids, improved visualization of lipid membranes using gold-labeled lipids, and advances in mass spectrometric analysis techniques will be discussed. Because lipid mediators are known to participate in a host of signal transduction and trafficking pathways within the cell, a comprehensive lipid toolbox that aids the science of lipidomics research is essential to better understand the molecular mechanisms of interactions between cellular components. This article is part of a Special Issue entitled Tools to study lipid functions.
Keywords:PS, (phosphatidylserine)   PE, (phosphatidylethanolamine)   PG, (phosphatidylglycerol)   PA, (phosphatidic acid)   PI, (phosphatidylinositol)   PC, (phosphatidylcholine)   oxPAPS, (oxidized 1-palmitoyl-2-arachidonoyl-phosphatidylserine)   DMPS, (dimyristoyl-phosphatidylserine)   oxPAPE, (oxidized 1-palmitoyl-2-arachidonoyl-phosphatidylethanolamine)   DMPE, (dimyristoyl-phosphatidylethanolamine)   oxPAPG, (oxidized 1-palmitoyl-2-arachidonoyl-phosphatidylglycerol)   DMPG, (dimyristoyl-phosphatidylglycerol)   DMPA, (dimyristoyl-phosphatidic acid)   oxPAPC, (oxidized 1-palmitoyl-2-arachidonoyl-phosphatidylcholine)   DMPC, (dimyristoyl-phosphatidylcholine)   MALDI-TOF MS, (matrix-assisted laser desorption/ionization time-of-flight mass spectrometry)   LDL, low density lipoprotein   PIP, phosphatidylinositol phosphate   PIP2, phosphatidylinositol-bisphosphate   PIP3, phosphatidylinositol-trisphosphate   ELISA, enzyme-linked immunosorbent assay   LMV, large multilamellar vesicles   MRI, magnetic resonance imaging   MIP-1α/CCL3, macrophage inflammatory protein 1α   MIP-1β/CCL4, macrophage inflammatory protein 1β   CCR5/CD195, C&ndash  C chemokine receptor type 5   CXCR4/CD195, C&ndash  C chemokine receptor type 4   MPER, membrane proximal external region   DMSO, dimethyl sulfoxide   CholPC, cholesterol phosphocholine   S1P, sphingosine-1-phosphate   HSA, human serum albumin   DCM, dichloromethane   DOPC, dioleoyl-phosphatidylcholine   DMABA NHS ester, 4-(dimethylamino) benzoic acid N-hydroxysuccinimide ester   NL141, neutral loss of 141   amu   CID, collision induced dissociation   PREC195, precursor ion scan of 195.1   amu   TBS, tris-buffered saline   EDTA, ethylenediaminetetraacetic acid   HRP, horseradish peroxidase
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