Exploiting gene deletion fitness effects in yeast to understand the modular architecture of protein complexes under different growth conditions |
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Authors: | Roland A Pache M Madan Babu Patrick Aloy |
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Affiliation: | 1. Structural and Computational Biology, Institute for Research in Biomedicine (IRB) Barcelona, c/Baldiri Reixac 10-12, 08028, Barcelona, Spain 2. Life Sciences, Barcelona Supercomputing Center (BSC), c/Jordi Girona 29, 08034, Barcelona, Spain 3. Systems Biology, MRC Laboratory of Molecular Biology, Hills Road, CB2 2QH, Cambridge, UK 4. Institució Catalana de Recerca i Estudis Avan?ats (ICREA), Passeig Lluís Companys 23, 08010, Barcelona, Spain
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Abstract: | Background Understanding how individual genes contribute towards the fitness of an organism is a fundamental problem in biology. Although recent genome-wide screens have generated abundant data on quantitative fitness for single gene knockouts, very few studies have systematically integrated other types of biological information to understand how and why deletion of specific genes give rise to a particular fitness effect. In this study, we combine quantitative fitness data for single gene knock-outs in yeast with large-scale interaction discovery experiments to understand the effect of gene deletion on the modular architecture of protein complexes, under different growth conditions. |
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