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An on-line method for the collection and analysis of quasi-steady-state kinetic data for enzyme-catalyzed reactions.
Authors:C Walter
Affiliation:The University of Houston, Department of Chemical Engineering, Houston, Texas 77004 USA;The University of Texas System Cancer Center, M.D. Anderson Hospital and Tumor Institute at Houston, Department of Biomathematics, Biochemistry and Biology, and Community Health Computing, Incorporated Houston, Texas 77025 USA
Abstract:
A special mixing device for initiating enzyme-catalyzed reactions is used to rapidly achieve an unperturbed quasi-steady state. An on-line computer is employed to sample the initial conditions, the mixing time, and concentrations that change as a function of time during this quasi-steady state phase. A statistical method for estimating initial, quasi-steady state rates from the time course of the enzyme-catalyzed reaction is described. Practical considerations for using this parameter estimation system lead to the conclusion that for the enzyme-catalyzed reaction tested, the extent overall reaction should be above .2% for high initial substrate concentrations, and above 1% for initial substrate concentrations in the range of the Michaelis constant. Application of this method to a typical enzyme-catalyzed reaction suggests that objective estimates of initial rates from a given set of concentrations and corresponding times can be obtained with a standard error in the range of 2–3%, but that reproducibility is not better than about 10%. When this procedure was used to estimate initial rates for the glycerol dehydrogenase-catalyzed oxidation of glycerol by NAD, it was found that this enzyme did not behave according to the classical “Michaelis-Menten” mechanism of enzyme action.
Keywords:
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