Genetic predisposition to left ventricular dysfunction: a multigenic and multi-analytical approach |
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Authors: | Avshesh Mishra Anshika Srivastava Tulika Mittal Naveen Garg Balraj Mittal |
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Affiliation: | 1. Department of Genetics, Sanjay Gandhi Postgraduate Institute of Medical Sciences (SGPGIMS), Lucknow 226014, UP, India;2. Department of Cardiology, Sanjay Gandhi Postgraduate Institute of Medical Sciences (SGPGIMS), Lucknow 226014, UP, India |
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Abstract: | BackgroundLeft ventricular dysfunction (LVD) is a complex, multifactorial condition, caused by mechanical, neurohormonal, and genetic factors. We have previously observed association of renin–angiotensin–aldosterone system (RAAS), matrix metalloproteinases (MMPs) and inflammatory pathway genes with LVD. Therefore the present study was undertaken to identify the combination of genetic variants and their possible interactions contributing towards genetic susceptibility to LVD in the background of coronary artery disease (CAD).Methods and resultsThe study included 230 healthy controls and 510 consecutive patients with angiographically confirmed CAD. Among them, 162 with reduced left ventricle ejection fraction (LVEF ≤ 45%) were categorized as having LVD. We analyzed 11 polymorphisms of RAAS, MMPs and inflammatory pathways. Single locus analysis showed that AT1 A1166C (p value < 0.001; OR = 3.67), MMP9 R668Q (p value = 0.007; OR = 3.48) and NFKB1-94 ATTG ins/del (p value = 0.013; OR = 2.01) polymorphisms were independently associated with LVD when compared with both non-LVD patients and healthy controls. High-order gene–gene interaction analysis, using classification and regression tree (CART) and multifactor dimensionality reduction (MDR) revealed that AT1 A1166C and NFKB1-94 ATTG ins/del polymorphisms jointly increased the risk of LVD to great extent (p-value = 0.001; OR = 8.55) and best four-factor interaction model consisted of AT1 A1166C, MMP7 A-181G, MMP9 R668Q and NFKB1-94 ATTG ins/del polymorphisms with testing accuracy of 0.566 and cross validation consistency (CVC) = 9/10 (permutation p < 0.001) showed increased risk for LVD respectively.ConclusionAT1 A1166C independently and in combination with MMP9 R668Q and NFKB1-94 ATTG ins/del polymorphisms plays important role in conferring genetic susceptibility to LVD in CAD patients. |
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Keywords: | ACE, angiotensin I converting enzyme AT1, angiotensin II type 1 receptor CART, classification and regression tree CAD, coronary artery disease CHF, congestive heart failure CVC, cross validation consistency G-score, genotype score LVD, left ventricular dysfunction MDR, multifactor dimensionality reduction MMPs, matrix metalloproteinases LVEF, left ventricle ejection fraction LVEDD, left ventricle end diastole dimensions LVESD, left ventricle end systolic dimensions RAAS, renin&ndash angiotensin&ndash aldosterone system RFLP, restriction fragment length polymorphism |
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