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Comparative transcriptomic analysis by RNA-seq to discern differential expression of genes in liver and muscle tissues of adult Berkshire and Jeju Native Pig
Authors:Simrinder Singh Sodhi  Ki-Duk Song  Mrinmoy Ghosh  Neelesh Sharma  Sung Jin Lee  Jeong Hyun Kim  Nameun Kim  Raj Kumar Mongre  Pradeep Adhikari  Jin Young Kim  Sang Pyo Hong  Sung Jong Oh  Dong Kee Jeong
Affiliation:1. Department of Animal Biotechnology, Faculty of Biotechnology, Jeju National University, Jeju 690-756, South Korea;2. The Animal Genomics and Breeding Center, Hankyong National University, Anseong-si, Gyeonggi-do 456-749, South Korea;3. Department of Animal Biotechnology, College of Animal Bioscience and Technology, Kangwon National University, Chuncheon 200-701, South Korea;4. Institute for Livestock Promotion, Jeju-do, Jeju 690-802, South Korea;5. Sustainable Agriculture Research Institute (SARI), Jeju National University, Jeju 690-756, South Korea
Abstract:
Keywords:DEGs, differentially expressed genes   JNP, Jeju Native Pig   GO, gene ontology   NGS, next generation sequencing   PE, paired-ends   CASAVA-v1.7, Consensus Assessment of Sequence and Variation v 1.7   UCSC, University of California Santa Cruz   EASE, Expression Analysis Systematic Explorer   KEGG, Kyoto Encyclopedia of Genes and Genomes   GLM, general linear model   RPKMg, reads per kilobase per million for the particular gene region   COL2A1, collagen type 2-alpha 1   PDK4, pyruvate dehydrogenase kinase-4   ACAA2, Acetyl-CoA-Acyltransferase-2   APOA4, Apolipoprotein-A4   CYP2E1, Cytochrome-P2E1   HMGCS2, Hydroxy methyl glutaryl CoA synthetase 2   HDL, high density lipids   POSTN, Periostein   MYBPH, myosin binding protein-H   HMGCS2, Hydroxy methyl glutaryl CoA synthetase 2   NASH, non-alcoholic steatohepatitis
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