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Molecular characterization of near-complete trisomy 17p syndrome from inverted duplication in association with cryptic deletion of 17pter
Authors:Chang-Hun Park  Hee-Jin Kim  Seung-Tae Lee  Jeong Meen Seo  Sun-Hee Kim
Affiliation:1. Department of Laboratory Medicine & Genetics, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea;2. Department of Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea
Abstract:Trisomy of the short arm of chromosome 17 (T17P) is a genomic disorder presenting with growth retardation, motor and mental retardation and constitutional physical anomalies including congenital heart defects. Here we report a case of near-complete T17P of which the genomic dosage aberrations were delineated by chromosomal microarray along with conventional diagnostic modalities. A 9-year-old Korean boy was admitted because of esophageal obstruction. He showed clinical manifestations of T17P, along with atypical features of scoliosis, corpus callosum agenesis, and seizure. Chromosome analyses revealed an inverted duplication of the chromosomal segment between 17p11.2 and 17p13.3. Chromosomal microarray revealed a duplication of the most of the short arm of chromosome 17 (size ~ 19.09 Mb) along with a cryptic deletion of a small segment of 17p terminal end (17pter) (~ 261 Kb). This is the first report of molecular characterization of near-complete T17P from inverted duplication in association with 17pter microdeletion. The fine delineation of the extent of genomic aberration by SNP-based microarray could help us better understand the molecular mechanism and genotype–phenotype correlations in T17P syndrome.
Keywords:T17P, trisomy of the short arm of chromosome 17   17pter, 17p terminal end   SNP, single nucleotide polymorphism   SMS, Smith&ndash  Magenis syndrome   PMP22, peripheral myelin protein 22 gene   ISCN, International System for Human Cytogenetic Nomenclature   FISH, fluorescence in situ hybridization   RARA, retinoic acid receptor, alpha gene   MLPA, multiplex ligation-dependent probe amplification   TP53, tumor protein p53 gene   RPH3AL, rabphilin 3A-like (without C2 domains) gene   DOC2B, double C2 beta gene   PAFAH1B1, platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 gene   YWHAE, tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide gene   RAI1, retinoic acid induced 1 gene
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