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Comparative visualization of genetic and physical maps with Strudel
Authors:Bayer Micha  Milne Iain  Stephen Gordon  Shaw Paul  Cardle Linda  Wright Frank  Marshall David
Affiliation:Genetics Programme, Scottish Crop Research Institute and Biomathematics and Statistics Scotland, Invergowrie, Dundee, UK. micha.bayer@scri.ac.uk
Abstract:
Data visualization can play a key role in comparative genomics, for example, underpinning the investigation of conserved synteny patterns. Strudel is a desktop application that allows users to easily compare both genetic and physical maps interactively and efficiently. It can handle large datasets from several genomes simultaneously, and allows all-by-all comparisons between these. Availability and implementation: Installers for Strudel are available for Windows, Linux, Solaris and Mac OS X at http://bioinf.scri.ac.uk/strudel/.
Keywords:
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