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环境微生物资源信息库的构建及应用
引用本文:王臣,代碧莹,张丹,岳华,杨惠兰,兰书焕,李旭东,谢翼飞.环境微生物资源信息库的构建及应用[J].微生物学报,2021,61(12):3820-3828.
作者姓名:王臣  代碧莹  张丹  岳华  杨惠兰  兰书焕  李旭东  谢翼飞
作者单位:中国科学院成都生物研究所, 四川 成都 610041;四川省环境微生物重点实验室, 四川 成都 610041;中国科学院成都生物研究所, 四川 成都 610041;四川省环境微生物重点实验室, 四川 成都 610041;中国科学院大学, 北京 100049
基金项目:中国科学院战略生物资源服务网络计划“生物资源衍生库”项目(KFJ-BRP-009);中国科学院战略生物资源能力建设项目(KFJ-BRP-017-59);四川省重点研发项目(2020YFS0021);四川省环境治理与生态保护重大科技专项(2019YFS0504)
摘    要:目的] 开发一个收集环境微生物信息并能快速合成环境治理微生物群体的网站。方法] 在“中国科学院战略生物资源服务网络计划”的支持下,依托资源丰富的环境微生物实体保藏库,完善菌株功能、环境适应及生理生化相关信息,建立了环境微生物资源信息库(网址:http://www.envimicrobe.com)。结果] 该信息库主要包含“资源库”、“群体合成系统”两个模块,其中资源库收集整合了环境微生物实体库中菌株的功能特性、环境适应性、生理生化特性等信息;群体合成系统则将这些功能菌特征信息与目标污染治理对象的污染物信息、环境条件参数信息相匹配,快速合成针对性强的环境治理微生物群体,研制环境微生物复合菌剂产品。结论] 该信息库的应用,不仅可以帮助研究者快速获取相关微生物资源信息,高效快速地开展环境微生物相关研究,而且也将会促进环境微生物资源的产业化推广应用。

关 键 词:环境生物技术  环境微生物资源库  信息库  群体合成系统
收稿时间:2020/12/15 0:00:00
修稿时间:2021/3/19 0:00:00

Construction and application of environmental microbial resources information repository
Chen Wang,Biying Dai,Dan Zhang,Hua Yue,Huilan Yang,Shuhuan Lan,Xudong Li,Yifei Xie.Construction and application of environmental microbial resources information repository[J].Acta Microbiologica Sinica,2021,61(12):3820-3828.
Authors:Chen Wang  Biying Dai  Dan Zhang  Hua Yue  Huilan Yang  Shuhuan Lan  Xudong Li  Yifei Xie
Institution:Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, Sichuan Province, China;Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, Sichuan Province, China;Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, Sichuan Province, China;Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, Sichuan Province, China;University of Chinese Academy of Sciences, Beijing 100049, China
Abstract:Objective] Developing a website that collects environmental microbial information and can quickly synthesize environmental control microbial populations.Methods] With the support of the "Chinese Academy of Sciences Strategic Biological Resources Service Network Plan", relying on the resource-rich environmental microbial entity collection library, we improved the information on function, environmental adaptation and physiological and biochemical characteristics of the deposited strains, and established environmental microbial information repository (website:http://www.envimicrobe.com/em.cib.cn). Results] The information repository mainly includes two modules:"resource library" and "group synthesis system". The resource database collects and integrates information on the functional characteristics, environmental adaptability, physiological and biochemical characteristics of the strains. The population synthesis system matches the feature information of these functional bacteria with the pollutant information and environmental condition parameter information of the target contaminants, and then quickly synthesizes targeted environmental management microbial populations, and develops environmental microbial compound products. Conclusion] The application of this information database not only helps researchers quickly obtain relevant microbial resource information and carry out environmental microbial research efficiently and quickly, but also promotes the industrialization and application of environmental microbial resources.
Keywords:environmental biotechnology  environmental microbial repository  information platform  group synthesis system
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