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Functional identification of optimized RNAi triggers using a massively parallel sensor assay
Authors:Fellmann Christof  Zuber Johannes  McJunkin Katherine  Chang Kenneth  Malone Colin D  Dickins Ross A  Xu Qikai  Hengartner Michael O  Elledge Stephen J  Hannon Gregory J  Lowe Scott W
Affiliation:Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA.
Abstract:
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  • Highlights? The Sensor assay reliably identifies potent single-copy shRNAs ? Potent shRNAs are rare and generally not predicted by existing algorithms ? Analyses of ~20,000 shRNAs reveal insights into shRNA biogenesis and function ? Sensor-based rules provide a criteria framework for rational shRNA design
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